DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hoxb3 and Rx

DIOPT Version :9

Sequence 1:NP_001073338.1 Gene:Hoxb3 / 15410 MGIID:96184 Length:433 Species:Mus musculus
Sequence 2:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster


Alignment Length:568 Identity:122/568 - (21%)
Similarity:176/568 - (30%) Gaps:227/568 - (39%)


- Green bases have known domain annotations that are detailed below.


Mouse    13 ALFGGYSSYP-GSNGFGYDGPPQPPFQAATHLEGDYQR-SACSLQSLGNAAPHAKSKELNGSCMR 75
            |.||.::::. |..|.||..|.:   .|..:|...:|. .|..||:..|                
  Fly   267 APFGYHNAFGFGQGGHGYGHPEE---AAGNYLNSMHQMVEANQLQTGAN---------------- 312

Mouse    76 PGLAPEPLPAPP---GSPPPSAAPTST------------TSNSNNGGGPSKSGPPKCGAGSNSTL 125
             |..|.|.|.||   ||.....|..:.            ..:|..|.||    ||..||....:.
  Fly   313 -GANPPPAPLPPSSFGSHQQHLAALAAQAQEQQNQHSKYAKSSPTGAGP----PPPPGAYFMESQ 372

Mouse   126 TKQIFPWM---------------KESRQTSKLK---------------------------NSSPG 148
            |..:.|..               ::....:||:                           ::.|.
  Fly   373 TAPVAPSQINYDERSMSSASDLEEDDDDAAKLQLDVTSPPTPSPRGQLAAKRKSAGVFCDDNEPK 437

Mouse   149 TAEGCGGGGGGG------------------------------------------GGGGGGGGGSS 171
            .|.|...||..|                                          ..|.|...|:|
  Fly   438 LANGQLPGGNYGIRPRSMEEVHHQQQSHHHQQQQQQQQQQQQLQQQQGFQHDFRNSGNGNPNGNS 502

Mouse   172 GGGGGG---GGGGDKSPPGSAAS----------------------------------KRARTAYT 199
            ..|..|   ....|....||.||                                  :|.||.:|
  Fly   503 NSGDHGERLNADSDSLVNGSCASSEDLNQTNSSEQGEKITSGSDDEGQDDNCAKKKHRRNRTTFT 567

Mouse   200 SAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGL--------- 255
            :.||.|||:.|..:.|.....|.|:|..:||.|.::::||||||.|:::.:|::.|         
  Fly   568 TYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKSESLRLGLTHFTQ 632

Mouse   256 ------ASSSGGP-SPAGSPPQPMQSTAGFMNALHSMTPSYDSPSPPAFGKGHQNAYALPSNYQP 313
                  ..:||.| .|..|||. :.:..||::...::.|||.:| |.:...|:....:|.:    
  Fly   633 LPHRLGCGASGLPVDPWLSPPL-LSALPGFLSHPQTVYPSYLTP-PLSLAPGNLTMSSLAA---- 691

Mouse   314 PLKGCGAPQKYPPTPASEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNH 378
              .|.......||.|                          :||.||:..|.|||..|. :|:.|
  Fly   692 --MGHHHAHNGPPPP--------------------------HVGHGGHGQPQPPPPPPP-HGVPH 727

Mouse   379 L--SHH--PSGNLDYNGAAPMGPNQHHGPCDPHPTYTDLSSHHAPPQG 422
            .  |||  |..:|          :.|.....||.|......|...|.|
  Fly   728 PHGSHHVVPLSHL----------SPHLSRMSPHATSLGSPHHGVTPLG 765

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hoxb3NP_001073338.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 63..124 17/75 (23%)
Antp-type hexapeptide 129..134 1/19 (5%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 136..195 20/164 (12%)
Homeobox 195..248 CDD:365835 23/52 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 249..276 9/42 (21%)
DUF4074 369..431 CDD:372548 15/58 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 389..433 7/34 (21%)
RxNP_726006.3 Homeobox 563..615 CDD:278475 23/51 (45%)
OAR 876..892 CDD:281777
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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