DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hoxb3 and prd

DIOPT Version :9

Sequence 1:NP_001073338.1 Gene:Hoxb3 / 15410 MGIID:96184 Length:433 Species:Mus musculus
Sequence 2:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster


Alignment Length:622 Identity:139/622 - (22%)
Similarity:185/622 - (29%) Gaps:246/622 - (39%)


- Green bases have known domain annotations that are detailed below.


Mouse    11 AAAL----FGGYSSYPGSN----------GFGYDGPPQPP--FQAATHLEGDYQRSACSLQSLGN 59
            |||:    |.|||:....|          |...:|.|.|.  ......:..|..| .|.:.....
  Fly     7 AAAMHRPFFNGYSTMQDMNSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIR-PCVISRQLR 70

Mouse    60 AAPHAKSKELN-----GSCMRPGLAPEPLPAPPGSPPPSAAPTSTTSNSNNGGGPSKSGPPKCGA 119
            .:....||.||     || :|||:.       .||.|..|.|    ...|......:|.|     
  Fly    71 VSHGCVSKILNRYQETGS-IRPGVI-------GGSKPRIATP----EIENRIEEYKRSSP----- 118

Mouse   120 GSNSTLTKQIFPWMKESRQTSKL-------KNSSPGTA-----------------EGCGGGGGGG 160
                    .:|.|  |.|:  ||       ::::|..:                 ....|...|.
  Fly   119 --------GMFSW--EIRE--KLIREGVCDRSTAPSVSAISRLVRGRDAPLDNDMSSASGSPAGD 171

Mouse   161 GGGGGGGGGS--SGGGGGGGGGGD------KSPPGSA---ASKRARTAYTSAQLVELEKEFHFNR 214
            |.......||  |||....|...|      :|.||.|   ..:|.||.::::||.|||:.|...:
  Fly   172 GTKASSSCGSDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRRCRTTFSASQLDELERAFERTQ 236

Mouse   215 YLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK-----AKG--------LASSSGGPSPAG 266
            |.....|.|:|...||:|.:|::||.|||.:.:|...     |.|        :|:||..||...
  Fly   237 YPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQHTSVSGGAPGGAAASVSHVAASSSLPSVVS 301

Mouse   267 SPPQ--PMQSTAGFMNALHSMTPSYD---------------------SP----SPPAFGKGHQNA 304
            |.|.  |:....|.::........||                     ||    :||     |.:.
  Fly   302 SVPSMAPLAMMPGSLDPATVYQQQYDFYGSHANISVSAAAPMASSNLSPGITTTPP-----HHHQ 361

Mouse   305 YALPS----NYQPPLKGCGAPQKYPPTP---ASEYEPHVLQANGGAYGT---------------- 346
            :..||    :|..|    |......||.   .|.||..:    |..|||                
  Fly   362 FYNPSANTASYIMP----GENGNTTPTGNIIVSSYETQL----GSVYGTETETHQTMPRNESPNE 418

Mouse   347 ----------PTMQGSPVYVGGGGY---------ADPLPPPAGPS-------------------- 372
                      ||.......|.|.|.         |||....|..|                    
  Fly   419 SVSSAFGQLPPTPNSLSAVVSGAGVTSSSGANSGADPSQSLANASAGSEELSAALKVESVDLIAA 483

Mouse   373 ----LYG-------------------LN-------------HLSHHPSGNLDYNGA--APMGPNQ 399
                |||                   ||             |...||..:.....:  ||...:.
  Fly   484 SQSQLYGGWSSMQALRPNAPLSPEDSLNSTSSTSQALDVTAHQMFHPYQHTPQYASYPAPGHAHS 548

Mouse   400 HHG-------PCDPHPTYTDLSSHHAPPQGRIQEAPK 429
            |||       ...|||.|.....|:.||.......|:
  Fly   549 HHGHPHAPHPHAHPHPQYAGAHPHYPPPSSSAHFMPQ 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hoxb3NP_001073338.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 63..124 17/65 (26%)
Antp-type hexapeptide 129..134 2/4 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 136..195 19/93 (20%)
Homeobox 195..248 CDD:365835 21/52 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 249..276 10/41 (24%)
DUF4074 369..431 CDD:372548 23/126 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 389..433 13/50 (26%)
prdNP_723721.1 PAX 27..154 CDD:238076 31/156 (20%)
Homeobox 217..269 CDD:278475 21/51 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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