Protein Alignment Hoxb1 and Scr

DIOPT Version :10

• Sequence 1: XP_006532343.1
• Gene: Hoxb1 / 15407
• MGIID: 96182
• Length: 330
• Species: Mus musculus
• Sequence 2: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Alignment Length: 269
• Identity: 80/269 - (29%)
• Similarity: 102/269 - (37%)
• Gaps: 57/269 - (21%)

Mouse    46 GGGLPSSALQQNSGYPVQQPPSSLGVSFPSPAPSGYAPAACNPSYGPSQYY-SVGQSEGDGSYFH 109
            |||:..|....||.........||.      :|...:....:|...||... ||.:|...|....
  Fly   181 GGGVSGSNNNNNSANSNNNNSQSLA------SPQDLSTRDISPKLSPSSVVESVARSLNKGVLGG 239

Mouse   110 PSSYGAQLGGLPDSYGAGGVGSGP---YPPPQPPYGTEQTATFASAYDLLSEDKESPCSSEPSTL 171
            ..:..|...||.:::...||..||   ..|...|.|.:..:...|..:..|..........|
  Fly   240 SLAAAAAAAGLNNNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNP--- 301

Mouse   172 TPRTFDWMKVKRNPPKTGRAQRSHF-LSLARAYTEGPEPGLHSFLQLLLLAAKVSELGLGAPGGL 235
             |:.:.|||            |.|. .|...|..|....
  Fly   302 -PQIYPWMK------------RVHLGTSTVNANGETKRQ-------------------------- 327

Mouse   236 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREGGR--MP 298
            ||::|..|..|||||||||:||:|.||:|||..|.|.|.|:||||||||||.||..:....  :|
  Fly   328 RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVP 392

Mouse   299 --AGPPGCP 305
              .||.|.|
  Fly   393 YHMGPYGHP 401

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hoxb1	XP_006532343.1	Homeodomain	236..289	CDD:459649	35/52 (67%)
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	35/81 (43%)