Protein Alignment Hoxb1 and lms

DIOPT Version :10

• Sequence 1: XP_006532343.1
• Gene: Hoxb1 / 15407
• MGIID: 96182
• Length: 330
• Species: Mus musculus
• Sequence 2: NP_611491.2
• Gene: lms / 37322
• FlyBaseID: FBgn0034520
• Length: 378
• Species: Drosophila melanogaster
• Alignment Length: 123
• Identity: 40/123 - (32%)
• Similarity: 54/123 - (43%)
• Gaps: 33/123 - (26%)

Mouse   236 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE------- 293
            ||.|:..|:..||.||...||||.|:|..:|..|:|.|||:||||||||.|.|::...
  Fly    90 RTAFSAAQIKALETEFERGKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETLAS 154

Mouse   294 --------GG---------------RMPAGPPGCPK---EAAGDASDQSACTSPEASP 325
                    ||               :.|.||.....   ..:|.|:..::.|:...||
  Fly   155 HYYAQLGIGGLARPMVVGDRLWLFSQTPTGPTPIQSIMLNGSGSAAPMASATTATGSP 212

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hoxb1	XP_006532343.1	Homeodomain	236..289	CDD:459649	29/52 (56%)
lms	NP_611491.2	Cnd2	33..>106	CDD:450400	7/15 (47%)
		Homeodomain	87..143	CDD:459649	29/52 (56%)