Protein Alignment Hoxb1 and scro

DIOPT Version :10

• Sequence 1: XP_006532343.1
• Gene: Hoxb1 / 15407
• MGIID: 96182
• Length: 330
• Species: Mus musculus
• Sequence 2: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Alignment Length: 240
• Identity: 61/240 - (25%)
• Similarity: 83/240 - (34%)
• Gaps: 71/240 - (29%)

Mouse   136 PPQPPYGTEQTATFASAYDLLSEDKESPCSSEPSTLTPRTFDWMKVKRNPPKTGRAQRS------ 194
            ||.|         |.|       :..|...:.|.|||..|.      .||...|....|
  Fly   138 PPSP---------FRS-------NSSSSSINSPGTLTTSTM------ANPYAMGTLYHSPGVQTY 180

Mouse   195 ----HFLSLARAYTE-----------GPEPGLHSFLQLLLLAAKVSELGLGAPGGL--------- 235
                ..||||..||:           ..:|.. :..:|:..:|..:...:|...||
  Fly   181 CGPTDNLSLAGHYTDMRNSASWYGSTANDPRF-AISRLMSSSASGTMSHMGNMSGLAACSVSDSK 244

Mouse   236 ------------RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQK 288
                        |..||..|:.|||:.|...:|||...|..:|:.:.|..|||||||||.|.|.|
  Fly   245 PLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCK 309

Mouse   289 KREREGGRMPAG----PPGCPKEAAGD--ASDQSACTSPEASPSS 327
            ::.:|.......    |...|:..|..  ..|...|:...:|..|
  Fly   310 RQAKEKAMAEQNQHNQPASSPRRVAVPVLVKDGKPCSGNNSSSQS 354

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hoxb1	XP_006532343.1	Homeodomain	236..289	CDD:459649	25/52 (48%)
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	25/55 (45%)