DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hoxa4 and Scr

DIOPT Version :9

Sequence 1:NP_032291.1 Gene:Hoxa4 / 15401 MGIID:96176 Length:285 Species:Mus musculus
Sequence 2:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster


Alignment Length:384 Identity:122/384 - (31%)
Similarity:144/384 - (37%) Gaps:163/384 - (42%)


- Green bases have known domain annotations that are detailed below.


Mouse    25 PHGGPGGGDGAVGGG-PGYPR--PQSAPHLPAPNPHAARQPPAYYAPRAREPSYPGGLYP----- 81
            |.||..||.|:.|.. ||...  |.:|.:.|...|:.   |.|:||.:|   :|.|...|     
  Fly    54 PSGGTNGGQGSAGAATPGANDYFPAAAAYTPNLYPNT---PQAHYANQA---AYGGQGNPDMVDY 112

Mouse    82 ---------------------APAAACPYACRGASPARPEQSPAPGAHPSPAPQPPAPPRHC--A 123
                                 |.|||       |..|:.:|..|...||....|.......|  |
  Fly   113 TQLQPQRLLLQQQQQQQQQQHAHAAA-------AVAAQQQQQLAQQQHPQQQQQQQQANISCKYA 170

Mouse   124 PGPTTPAVATGGSAP-------------------ACP--LLLADQGP------------------ 149
            ..|.||..:.||...                   |.|  |...|..|                  
  Fly   171 NDPVTPGGSGGGGVSGSNNNNNSANSNNNNSQSLASPQDLSTRDISPKLSPSSVVESVARSLNKG 235

Mouse   150 -------------------------AGP--------------------------------KGKE- 156
                                     .||                                .||: 
  Fly   236 VLGGSLAAAAAAAGLNNNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKN 300

Mouse   157 -PVVYPWMKKIHV--SAVNSSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 218
             |.:|||||::|:  |.||::   ||.||.||:|||.|.|||||||||||||||||||||||.||
  Fly   301 PPQIYPWMKRVHLGTSTVNAN---GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 362

Mouse   219 LSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNTASAPAGPPGKAQTHSPHPHP----HP 273
            |:|||:|||||||||||||:|     ||.|.|......||.|       ||:.    ||
  Fly   363 LTERQIKIWFQNRRMKWKKEH-----KMASMNIVPYHMGPYG-------HPYHQFDIHP 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hoxa4NP_032291.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 19..70 17/47 (36%)
Antp-type hexapeptide 159..164 3/4 (75%)
Homeobox 183..236 CDD:278475 45/52 (87%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 238..285 12/40 (30%)
ScrNP_001368995.1 Homeobox 328..381 CDD:395001 46/52 (88%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45771
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.910

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