DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hoxa2 and pb

DIOPT Version :10

Sequence 1:NP_034581.1 Gene:Hoxa2 / 15399 MGIID:96174 Length:372 Species:Mus musculus
Sequence 2:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster


Alignment Length:344 Identity:126/344 - (36%)
Similarity:162/344 - (47%) Gaps:67/344 - (19%)


- Green bases have known domain annotations that are detailed below.


Mouse     8 EIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAGVG 72
            |.||||||||:||.|....|     :|..|.|          |.....|..:....:...|.|||
  Fly    97 EGGFINSQPSMAEFLNHLSP-----ESPKIGT----------PVGSGAIGGVGVNVNVNVGVGVG 146

Mouse    73 GRPKSSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALPPAAASTGPACLGHKESLEIADGSGG 137
                 .|.|. ....|.|....||||||||||.::|        |:.....|.....|... ..|
  Fly   147 -----YPVGV-VPQTPDGMDSVPEYPWMKEKKTSRK--------SSNNNNQGDNSITEFVP-ENG 196

Mouse   138 GSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKE 202
            ..||||||||||||||||||||||||||||||:||||.|||||||||||||||||||||||..|.
  Fly   197 LPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKT 261

Mouse   203 NQNSEGKFKNLEDSDKVEEDEEEKSLFEQALSVSGALLEREGYTFQQNALSQQQA-PNGHNGDSQ 266
            :....      :||.|.::|:.:        |.|.:....:|.....:.:....: ..|||.:  
  Fly   262 DDEDN------KDSLKGDDDQSD--------SNSNSKKSCQGCELPSDDIPDSTSNSRGHNNN-- 310

Mouse   267 TFPVSPLTSNEKNLKHFQHQSPTVPNCLSTMGQNCGAGLNNDSPEAIEVPSLQDFNVFSTDSCLQ 331
                :|..:|         .:|:..|.  |...:...|::::...:..|.:   .||.|.||.:.
  Fly   311 ----TPSATN---------NNPSAGNL--TPNSSLETGISSNLMGSTTVSA---SNVISADSSVA 357

Mouse   332 LSDALSPSLPGSLDSPVDI 350
            .|.:|...:..|  ||:.:
  Fly   358 SSVSLDEDIEES--SPIKV 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hoxa2NP_034581.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 48..95 10/46 (22%)
Antp-type hexapeptide 96..101 4/4 (100%)
Homeodomain 140..196 CDD:459649 53/55 (96%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 194..225 10/30 (33%)
pbNP_476669.3 Homeodomain 199..255 CDD:459649 53/55 (96%)

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