DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hoxa1 and Ubx

DIOPT Version :10

Sequence 1:NP_034579.3 Gene:Hoxa1 / 15394 MGIID:96170 Length:336 Species:Mus musculus
Sequence 2:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster


Alignment Length:428 Identity:100/428 - (23%)
Similarity:155/428 - (36%) Gaps:162/428 - (37%)


- Green bases have known domain annotations that are detailed below.


Mouse     6 MNSFLE-------YP------ILGSG----DSGTCSARAYPSDHGITTFQSCAVSANSCGGDDRF 53
            |||:.|       :|      .:|||    .:.:.:|.||                         
  Fly     1 MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAY------------------------- 40

Mouse    54 LVGRGVQIS---SPHHHHHHHHHHHPQTATYQTSGNLGISYSHSSCGPSYGAQNFSAPYGPYGLN 115
               ||..:|   ||      :.:||.|..|..:..:..|:   ::|...||  :.:..|....||
  Fly    41 ---RGFPLSLGMSP------YANHHLQRTTQDSPYDASIT---AACNKIYG--DGAGAYKQDCLN 91

Mouse   116 QEADVSGGY-------------------------------------------------------P 125
            .:||...||                                                       .
  Fly    92 IKADAVNGYKDIWNTGGSNGGGGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPS 156

Mouse   126 PCAP-AVYSGNLSTPMVQHHHHHQGYAGGTVGSPQYIHHSYGQEQQTLALA----TYNNSLSPLH 185
            .|.| :...|.|.|.......|..|.|||.| |....:.:.|..|..:.:|    .:|.:.:...
  Fly   157 ACTPDSRVGGYLDTSGGSPVSHRGGSAGGNV-SVSGGNGNAGGVQSGVGVAGAGTAWNANCTISG 220

Mouse   186 ASHQEACRSPASETSSPAQTF-DWMKV----KRNPPKT---GKVGEYGYVGQ------------- 229
            |:.|.|..|...:.|:  .|| .||.:    ..:|.|:   ..:.:||.:..             
  Fly   221 AAAQTAAASSLHQASN--HTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGS 283

Mouse   230 --PNAVRTN---------FTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRM 283
              |:.:.||         :|..|..|||||||.|.||||.||:|:|.:|.|.|.|:|||||||||
  Fly   284 LLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 348

Mouse   284 KQKKREKEGLLPISPATPPGSDEKTEESSEKSSPSPSA 321
            |.|| |.:.:..:       ::::.:..::|::.:.:|
  Fly   349 KLKK-EIQAIKEL-------NEQEKQAQAQKAAAAAAA 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hoxa1NP_034579.3 COG5576 177..>287 CDD:227863 49/141 (35%)
Homeodomain 234..287 CDD:459649 34/61 (56%)
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 32/55 (58%)

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