Protein Alignment Hoxa1 and Ubx

DIOPT Version :9

• Sequence 1: NP_034579.3
• Gene: Hoxa1 / 15394
• MGIID: 96170
• Length: 336
• Species: Mus musculus
• Sequence 2: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Alignment Length: 428
• Identity: 100/428 - (23%)
• Similarity: 155/428 - (36%)
• Gaps: 162/428 - (37%)

Mouse     6 MNSFLE-------YP------ILGSG----DSGTCSARAYPSDHGITTFQSCAVSANSCGGDDRF 53
            |||:.|       :|      .:|||    .:.:.:|.||
  Fly     1 MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAY------------------------- 40

Mouse    54 LVGRGVQIS---SPHHHHHHHHHHHPQTATYQTSGNLGISYSHSSCGPSYGAQNFSAPYGPYGLN 115
               ||..:|   ||      :.:||.|..|..:..:..|:   ::|...||  :.:..|....||
  Fly    41 ---RGFPLSLGMSP------YANHHLQRTTQDSPYDASIT---AACNKIYG--DGAGAYKQDCLN 91

Mouse   116 QEADVSGGY-------------------------------------------------------P 125
            .:||...||                                                       .
  Fly    92 IKADAVNGYKDIWNTGGSNGGGGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPS 156

Mouse   126 PCAP-AVYSGNLSTPMVQHHHHHQGYAGGTVGSPQYIHHSYGQEQQTLALA----TYNNSLSPLH 185
            .|.| :...|.|.|.......|..|.|||.| |....:.:.|..|..:.:|    .:|.:.:...
  Fly   157 ACTPDSRVGGYLDTSGGSPVSHRGGSAGGNV-SVSGGNGNAGGVQSGVGVAGAGTAWNANCTISG 220

Mouse   186 ASHQEACRSPASETSSPAQTF-DWMKV----KRNPPKT---GKVGEYGYVGQ------------- 229
            |:.|.|..|...:.|:  .|| .||.:    ..:|.|:   ..:.:||.:..
  Fly   221 AAAQTAAASSLHQASN--HTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGS 283

Mouse   230 --PNAVRTN---------FTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRM 283
              |:.:.||         :|..|..|||||||.|.||||.||:|:|.:|.|.|.|:|||||||||
  Fly   284 LLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRM 348

Mouse   284 KQKKREKEGLLPISPATPPGSDEKTEESSEKSSPSPSA 321
            |.|| |.:.:..:       ::::.:..::|::.:.:|
  Fly   349 KLKK-EIQAIKEL-------NEQEKQAQAQKAAAAAAA 378

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hoxa1	NP_034579.3	COG5576	177..>287	CDD:227863	49/141 (35%)
		Homeobox	234..287	CDD:365835	34/61 (56%)
Ubx	NP_536752.1	Homeobox	299..352	CDD:395001	32/52 (62%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.810