Protein Alignment Hoxa1 and Scr

DIOPT Version :9

• Sequence 1: NP_034579.3
• Gene: Hoxa1 / 15394
• MGIID: 96170
• Length: 336
• Species: Mus musculus
• Sequence 2: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Alignment Length: 358
• Identity: 92/358 - (25%)
• Similarity: 133/358 - (37%)
• Gaps: 101/358 - (28%)

Mouse    16 GSGDSGTC---------SARAYPSDHGITTFQSCAVSANSCGGD-------------DRFLVGRG 58
            |.|.:|..         :|.||..:....|.|:...:..:.||.             .|.|:.:.
  Fly    61 GQGSAGAATPGANDYFPAAAAYTPNLYPNTPQAHYANQAAYGGQGNPDMVDYTQLQPQRLLLQQQ 125

Mouse    59 VQISSPHHHH-----------HHHHHHHPQTATYQTSGNLGISYSH-------SSCGPSYGAQNF 105
            .|.....|.|           ......|||....|...|:...|::       |..|...|:.|.
  Fly   126 QQQQQQQHAHAAAAVAAQQQQQLAQQQHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNN 190

Mouse   106 SAPYGPYGLNQEA----------DVSGGYPPCAPA-------------VYSGNLSTPM----VQH 143
            :........|.::          |:|   |..:|:             |..|:|:...    :.:
  Fly   191 NNSANSNNNNSQSLASPQDLSTRDIS---PKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNN 252

Mouse   144 HHHHQGYAGGTVGSPQYIHHSYGQEQQTLALATYNNSLSPLHASHQEACRSPASETSSPAQTFDW 208
            :|...|.:||. |:.....||.|.........:.|.:.|..::.:.:         .:|.|.:.|
  Fly   253 NHSGSGVSGGP-GNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGK---------KNPPQIYPW 307

Mouse   209 MK--------VKRNPPKTGKVGEYGYVGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAA 265
            ||        |..|             |:....||::|..|..|||||||||:||||.||:|||.
  Fly   308 MKRVHLGTSTVNAN-------------GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAH 359

Mouse   266 SLQLNETQVKIWFQNRRMKQKKREKEGLLPISP 298
            :|.|.|.|:||||||||||.||..|...:.|.|
  Fly   360 ALCLTERQIKIWFQNRRMKWKKEHKMASMNIVP 392

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hoxa1	NP_034579.3	COG5576	177..>287	CDD:227863	46/117 (39%)
		Homeobox	234..287	CDD:365835	36/52 (69%)
Scr	NP_001368995.1	Homeobox	328..381	CDD:395001	36/52 (69%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X14
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.810