DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnrnpk and mub

DIOPT Version :9

Sequence 1:NP_001288269.1 Gene:Hnrnpk / 15387 MGIID:99894 Length:464 Species:Mus musculus
Sequence 2:NP_001246875.1 Gene:mub / 40436 FlyBaseID:FBgn0262737 Length:573 Species:Drosophila melanogaster


Alignment Length:445 Identity:114/445 - (25%)
Similarity:175/445 - (39%) Gaps:112/445 - (25%)


- Green bases have known domain annotations that are detailed below.


Mouse    37 RNTDEMVEL--RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGE 99
            ::.|..|.|  |:::|.|..|::|||.|:.:...|.:..|.:::.|.|.||||:::|.....|..
  Fly    16 KHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSGTTNAIFS 80

Mouse   100 ILKKIIPTLEEGLQL---PSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIG 161
            ....|....||....   ......:|:|                      :||::..|..|.:||
  Fly    81 AFTLITKKFEEWCSQFNDVGKVGKTQIP----------------------IRLIVPASQCGSLIG 123

Mouse   162 VKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYD 226
            ..|:||||:|:.|..:|::..|..|:||:|.|.:.|..:::.:||..|..::.|||.:|...||.
  Fly   124 KSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYR 188

Mouse   227 P-----------NFYDETYDYGGFTMMFDDRRGRPVGFPMR-GRGGFDRMPPGRGGRPMPPSRRD 279
            |           |....|.. |.:.:  ..:...|| ||:. ..||   :..|..|...|..:  
  Fly   189 PKPQVTGPVILANGQAFTIQ-GNYAV--PTQETCPV-FPLALATGG---LHAGISGLADPLLK-- 244

Mouse   280 YDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADET 344
                           |...:|...|.:..|...|......|.:....|..|              
  Fly   245 ---------------GAHLQGAIPAHHHHLQQMPDVAKNPLASLAALGLAG-------------- 280

Mouse   345 WDSAIDTWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLGGPIITTQ-----VTIPKDLAGSIIG 404
                            ..|....|.:::           ..|....|     :|:..||.|.|||
  Fly   281 ----------------MNPASTGGINHT-----------ANPANRAQQQQHEMTVSNDLIGCIIG 318

Mouse   405 KGGQRIKQIRHESGASIKI---DEPLEGSEDRIITITGTQDQIQNAQYLLQNSVK 456
            |||.:|.:||..|||.|:|   :|...|:.||.|||:|..|.:..||||:..||:
  Fly   319 KGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQYLINMSVE 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnrnpkNP_001288269.1 Necessary for interaction with DDX1. /evidence=ECO:0000250 1..276 69/255 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37 114/445 (26%)
ROKNT 4..43 CDD:400419 1/5 (20%)
KH-I_HNRNPK_rpt1 42..105 CDD:411860 20/64 (31%)
2 X 22 AA approximate repeats 54..421 91/386 (24%)
5 X 4 AA repeats of G-X-G-G 59..407 81/367 (22%)
KH-I_HNRNPK_rpt2 144..213 CDD:411861 24/68 (35%)
Interaction with ZIK1. /evidence=ECO:0000269|PubMed:8910362 209..337 28/139 (20%)
RNA-binding RGG-box 236..273 9/37 (24%)
2 X 6 AA approximate repeats 245..329 16/84 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 250..329 16/79 (20%)
KH-I_HNRNPK_rpt3 387..460 CDD:411862 34/78 (44%)
mubNP_001246875.1 PCBP_like_KH 25..86 CDD:239089 18/60 (30%)
PCBP_like_KH 109..172 CDD:239089 23/62 (37%)
KH-I 305..368 CDD:238053 30/62 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D394765at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1164
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.950

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