Sequence 1: | NP_001041526.1 | Gene: | Hnrnpab / 15384 | MGIID: | 1330294 | Length: | 332 | Species: | Mus musculus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_731825.1 | Gene: | sqd / 41666 | FlyBaseID: | FBgn0263396 | Length: | 344 | Species: | Drosophila melanogaster |
Alignment Length: | 369 | Identity: | 132/369 - (35%) |
---|---|---|---|
Similarity: | 185/369 - (50%) | Gaps: | 67/369 - (18%) |
- Green bases have known domain annotations that are detailed below.
Mouse 5 AEEQPMETTGATENGHEAAPEGEAPVEPSAAAAAPAASAGSGGGTTTAPSGNQNGAEGDQINASK 69
Mouse 70 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLD 134
Mouse 135 QKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKR 199
Mouse 200 RGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQ 264
Mouse 265 SQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYG-YY--GYGPGYDYSQ--------------- 311
Mouse 312 -----------------------GSTNYGKSQRRGGHQNNYKPY 332 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Hnrnpab | NP_001041526.1 | CBFNT | 1..75 | CDD:285369 | 16/69 (23%) |
RRM1_hnRNPAB | 76..150 | CDD:241201 | 36/73 (49%) | ||
RRM2_hnRNPAB | 155..234 | CDD:241028 | 32/78 (41%) | ||
sqd | NP_731825.1 | RRM_SF | 58..129 | CDD:302621 | 33/70 (47%) |
RRM2_hnRNPD_like | 137..211 | CDD:240775 | 32/73 (44%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 85 | 1.000 | Domainoid score | I8163 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 226 | 1.000 | Inparanoid score | I3473 |
Isobase | 1 | 0.950 | - | 0.918296 | Normalized mean entropy | S1109 |
OMA | 1 | 1.010 | - | - | QHG45859 | |
OrthoDB | 1 | 1.010 | - | - | D496221at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001417 | |
OrthoInspector | 1 | 1.000 | - | - | otm43940 | |
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | LDO | PTHR48033 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R4769 |
SonicParanoid | 1 | 1.000 | - | - | X985 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
13 | 13.020 |