DRSC/TRiP Functional Genomics Resources

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Protein Alignment Herc2 and Rcc1

DIOPT Version :9

Sequence 1:NP_001347009.1 Gene:Herc2 / 15204 MGIID:103234 Length:4836 Species:Mus musculus
Sequence 2:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster


Alignment Length:497 Identity:125/497 - (25%)
Similarity:191/497 - (38%) Gaps:93/497 - (18%)


- Green bases have known domain annotations that are detailed below.


Mouse  2952 LESTATIRTKVFVWGLNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYS 3016
            |....|:...|.|.|..|..|| ||....::....|......:.|.::.|......:|..|.:||
  Fly    34 LPKRRTVLGNVLVCGNGDVGQL-GLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYS 97

Mouse  3017 CGEATNGRLGLGMS-SGTVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDD--G 3078
            .|....|.||...| .|:...|..|....    |.:.:.:|..|:..|..||:||:||...|  |
  Fly    98 FGCNDEGALGRDTSEDGSESKPDLIDLPG----KALCISAGDSHSACLLEDGRVFAWGSFRDSHG 158

Mouse  3079 KLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGH-------GD 3136
            .:|  ..::.:|...|:.::......||.|:.|...||::|:::|.|..|.|:||.       |:
  Fly   159 NMG--LTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGE 221

Mouse  3137 ---------NTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGR--GG 3190
                     ..|||.....|..............|::||..:...||      .:|.:|..  .|
  Fly   222 GRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGL------NNFKQLAHETKG 280

Mouse  3191 SEGCNIPQNIERLNGQGVCQIECGAQFSLALT---KSGVVWTWGKGDYFRLGHG--SDVHVRKPQ 3250
            .|....|...|.   :.:..|..|...::.||   |..||   |:.:|.|||.|  .|| |.||.
  Fly   281 KEFALTPIKTEL---KDIRHIAGGQHHTVILTTDLKCSVV---GRPEYGRLGLGDVKDV-VEKPT 338

Mouse  3251 VVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQGNGTTTVNRKPTLV--QGLEGQKIT 3313
            :|:.|. :|||.|..|.:...|||..|::|:||...:.|.|.|......:|.:|  :..:|:.:.
  Fly   339 IVKKLT-EKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHML 402

Mouse  3314 RVACGSSHSVAWTTVDVATPSVHEPVLFQTARDPLGASYL------------------------- 3353
            ..:.|..|::.....|......:.||...      |:|.:                         
  Fly   403 LASGGGQHAIFLVKADKQDQKENVPVKVS------GSSSISKKDKTPPQDNVDKEAENVDKQEQK 461

Mouse  3354 -GVPSDADSSSSSNKISGANNC------------KPNRPSLA 3382
             .:|:.|.:||..||....:|.            |.|.|:.|
  Fly   462 ENLPAKASTSSKKNKTPPQDNADKEAENVDKQEQKENLPAKA 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Herc2NP_001347009.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 58..90
RCC1 1-1 416..462
RCC1 1-2 463..513
ATS1 <494..787 CDD:227511
RCC1 1-3 514..569
RCC1 1-4 570..621
RCC1 1-5 624..675
RCC1 1-6 676..727
RCC1 1-7 729..779
Cyt-b5 1212..1283 CDD:365921
MIB_HERC2 1871..1930 CDD:369043
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2351..2376
UBA_HERC2 2461..2508 CDD:270585
Cul7 2555..2632 CDD:371573
SH3_15 2640..2697 CDD:375773
ZZ_HERC2 2707..2751 CDD:239084
APC10-HERC2 2766..2911 CDD:176485
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2928..2947
ATS1 2957..3323 CDD:227511 108/393 (27%)
RCC1 2-1 2959..3010 11/50 (22%)
RCC1 2-2 3011..3065 15/54 (28%)
RCC1 2-3 3066..3117 16/52 (31%)
RCC1 2-4 3119..3169 15/65 (23%)
RCC1 2-5 3172..3223 12/55 (22%)
RCC1 2-6 3225..3275 22/51 (43%)
RCC1 2-7 3276..3327 12/52 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3479..3499
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3517..3537
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3604..3632
RCC1 3-1 3953..4004
RCC1 3-2 4006..4058
ATS1 4025..4330 CDD:227511
RCC1 3-3 4060..4110
RCC1 3-4 4112..4164
RCC1 3-5 4166..4216
RCC1 3-6 4218..4268
RCC1 3-7 4270..4320
HECTc 4423..4794 CDD:238033
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 4806..4836
Rcc1NP_523943.1 RCC1 42..89 CDD:278826 11/47 (23%)
RCC1 92..141 CDD:278826 14/52 (27%)
RCC1_2 131..158 CDD:290274 10/26 (38%)
RCC1 144..193 CDD:278826 15/50 (30%)
RCC1_2 182..209 CDD:290274 10/26 (38%)
RCC1 363..414 CDD:278826 12/50 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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