DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hcfc1 and Lztr1

DIOPT Version :9

Sequence 1:XP_006527898.1 Gene:Hcfc1 / 15161 MGIID:105942 Length:2090 Species:Mus musculus
Sequence 2:NP_001259114.1 Gene:Lztr1 / 31037 FlyBaseID:FBgn0040344 Length:998 Species:Drosophila melanogaster


Alignment Length:441 Identity:98/441 - (22%)
Similarity:166/441 - (37%) Gaps:97/441 - (21%)


- Green bases have known domain annotations that are detailed below.


Mouse    18 RWKRVVGWSGPVPRPRHGHRAVAIKELIVVFGGGN-EGIVDELHVYNTATNQWFIPAVRGDIPPG 81
            :|.|::..:..|...|..|..||.|:.:.||||.| :.::::|..:......|......|..|..
  Fly   237 QWTRMLECAEFVGAKRSKHTVVAYKDAMFVFGGDNGKNMLNDLIRFGVKDKSWGRACATGTPPAP 301

Mouse    82 CAAYGFVCDGTRLLVFGGMVEYGKYSNDL--------------YELQASRW-EWKRLKAKTPKNG 131
            ...:..|..|:.:.:|||      |:.|:              |:.|::.| |||       .:|
  Fly   302 RYHHSAVVAGSSMFIFGG------YTGDIHSNSNLTNKNDLFEYKFQSAMWVEWK-------FSG 353

Mouse   132 PPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVL 196
            ..|.||..|..::..||.:::.|...::.         |||::.|.|   :|...|:.....|..
  Fly   354 RQPVPRSAHGAAVYDNKMWIYAGYDGNAR---------LNDMWTLNL---TGENQWEEVDQLGDR 406

Mouse   197 PPPRESHTAVVYTEKDNKKSKLVIYGGMSGCRL-GDLWTLDIETLTW----NKPSLSGVAPLPRS 256
            ||...:....|      .:..:.::.|.||.:: ..|:....:|.||    |:|.|.|....|.|
  Fly   407 PPTCCNFPVAV------ARDAMYVFSGQSGLQITNSLFEFHFKTRTWRRISNEPVLRGATSAPPS 465

Mouse   257 L---HSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLEDNI 318
            .   |:.......:|||||              ..:....|.|.|.:||:..|..|..:...| :
  Fly   466 RRYGHTMVHHDRFLYVFGG--------------SADSTLPNDLHCYDLDSQVWSVIQPEQNSD-V 515

Mouse   319 PRARAGHCAVAINTRLYIWSG------------------------RDGYRKAWNNQVCCKDLWYL 359
            |..|..|.:..|...:||:.|                        ||.:.|.:.::..|...:.:
  Fly   516 PSGRVFHASAVICDAMYIFGGTVDNSVRRGDTYRFQFSSYPKCTLRDDFGKFFQDKQFCDIQFIV 580

Mouse   360 ETEKPPPPARVQLVRANTNSLEVSWGAVATADSYLLQLQK-YDIPATAATA 409
            ..|:....|.:..|.|.:..|...  .:|..::...|::| |.:....|.|
  Fly   581 GAEEIRILAHIAFVAARSKYLRNK--ILAAREARQQQMEKVYGVGQVDALA 629

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hcfc1XP_006527898.1 PLN02193 <27..322 CDD:177844 75/318 (24%)
KELCH repeat 33..80 CDD:276965 13/47 (28%)
KELCH repeat 84..134 CDD:276965 14/64 (22%)
KELCH repeat 137..196 CDD:276965 13/58 (22%)
KELCH repeat 200..253 CDD:276965 12/57 (21%)
KELCH repeat 255..319 CDD:276965 15/66 (23%)
Kelch_5 319..>351 CDD:372758 10/55 (18%)
KELCH repeat 322..367 CDD:276965 11/68 (16%)
Herpes_BLLF1 <441..771 CDD:282904
FN3 <1911..1940 CDD:238020
Lztr1NP_001259114.1 PLN02153 237..554 CDD:177814 83/362 (23%)
KELCH repeat 252..298 CDD:276965 13/45 (29%)
Kelch_3 261..310 CDD:290151 11/48 (23%)
Kelch_5 299..>329 CDD:290565 8/35 (23%)
KELCH repeat 302..355 CDD:276965 14/65 (22%)
Kelch_1 358..400 CDD:279660 13/53 (25%)
KELCH repeat 359..407 CDD:276965 13/59 (22%)
KELCH repeat 410..455 CDD:276965 9/50 (18%)
Kelch_1 410..452 CDD:279660 8/47 (17%)
Kelch_1 466..509 CDD:279660 13/56 (23%)
KELCH repeat 467..509 CDD:276965 13/55 (24%)
BTB 564..704 CDD:279045 13/68 (19%)
BTB 575..707 CDD:197585 11/57 (19%)
SPOP_C_like 707..766 CDD:269810
BTB 798..898 CDD:279045
BTB 802..902 CDD:197585
SPOP_C_like 902..960 CDD:269810
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1494
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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