DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hars and HisRS

DIOPT Version :9

Sequence 1:NP_032240.3 Gene:Hars / 15115 MGIID:108087 Length:509 Species:Mus musculus
Sequence 2:NP_573305.2 Gene:HisRS / 32841 FlyBaseID:FBgn0027087 Length:564 Species:Drosophila melanogaster


Alignment Length:559 Identity:329/559 - (58%)
Similarity:397/559 - (71%) Gaps:58/559 - (10%)


- Green bases have known domain annotations that are detailed below.


Mouse     1 MAD-RAALEELVRLQGAHVRGLKEQKASAE----------------------------------- 29
            |:| |..:.|.:::||..||.||..|.|.|                                   
  Fly     1 MSDTREQILEQIKVQGDLVRQLKAAKESKEKTAPSGGGRVSSSGVPAQRQQQQQPQKQQQAQVQQ 65

Mouse    30 -------QIEEEVTKLLKLKAQLGQDEG--KQKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFK 85
                   ||:|||.:||.|||.||.|..  .|||.||||||||||.|:||.:|:.|.|.|::.||
  Fly    66 QQHEQLHQIDEEVARLLALKATLGGDAAPTNQKFTLKTPKGTRDYGPQQMTLRQGVLDKIVQVFK 130

Mouse    86 RHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRY 150
            |||.|.||||||||||.|||||||||||||||||||||:||:|||||||.||||||||:::||||
  Fly   131 RHGGEAIDTPVFELKEVLTGKYGEDSKLIYDLKDQGGEILSMRYDLTVPLARYLAMNKISSIKRY 195

Mouse   151 HIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIMCEILSSLQIGNFLVKVNDRR 215
            ||||||||||||||:|||||||||||||||.:|||:|||||:||:.|||.:|.||::::|:|.|:
  Fly   196 HIAKVYRRDNPAMTKGRYREFYQCDFDIAGTYDPMLPDAECVKIVSEILDTLDIGDYVIKLNHRQ 260

Mouse   216 ILDGMFAVCGVPDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLV 280
            :|||||..||||...||||||:||||||..|.:|:.|||.||||....|||||:||:..||..||
  Fly   261 LLDGMFQACGVPADSFRTICSAVDKLDKSPWADVRKEMVDEKGLDEAAADRIGEYVRLSGGAELV 325

Mouse   281 EQLLQDPKLSQNKQAVEGLGDLKLLFEYLILFGIDDKISFDLSLARGLDYYTGVIYEAVL----- 340
            ||||.:.||.....||:||..:|.|.:|..:||:|.::|||||||||||||||||||.||     
  Fly   326 EQLLANEKLKAVPNAVKGLEGMKQLLKYCSIFGLDKRVSFDLSLARGLDYYTGVIYEGVLKGESA 390

Mouse   341 -----LQMPTQAGE---EPLGVGSIAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRL 397
                 .:...|.||   ||..|||:|.|||||.|||||||:|:.|||||:|||||||||::|.|.
  Fly   391 TVASPAKTSQQNGEQANEPATVGSVAGGGRYDNLVGMFDPRGKAVPCVGVSIGVERIFSVLEARA 455

Mouse   398 EASEEKVRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPL 462
            .||..|:||::.:|.||||.|.|.|:|||:::.|||||:|||..||.|||||.|||:|||..|||
  Fly   456 AASGLKLRTSDVEVYVASAHKGLHEQRLKVLNLLWDAGVKAEHSYKLNPKLLVQLQHCEEHQIPL 520

Mouse   463 VAIIGEQELKDGVIKLRSVASREEVDVRREDLVEEIRRR 501
            |.::|:.||..|::|||.|.:|||.:|:.|||..|||||
  Fly   521 VVVLGDAELAQGLVKLREVTTREETNVKLEDLAAEIRRR 559

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
HarsNP_032240.3 HisRS_RNA 5..49 CDD:238474 22/85 (26%)
HisS 56..501 CDD:223202 298/457 (65%)
HisRS-like_core 69..394 CDD:238396 226/337 (67%)
L-histidine binding. /evidence=ECO:0000250|UniProtKB:P12081 130..132 1/1 (100%)