DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gspt1 and eRF3

DIOPT Version :9

Sequence 1:NP_666178.2 Gene:Gspt1 / 14852 MGIID:1316728 Length:636 Species:Mus musculus
Sequence 2:NP_001260415.1 Gene:eRF3 / 34658 FlyBaseID:FBgn0020443 Length:619 Species:Drosophila melanogaster


Alignment Length:636 Identity:377/636 - (59%)
Similarity:449/636 - (70%) Gaps:78/636 - (12%)


- Green bases have known domain annotations that are detailed below.


Mouse    56 AQREN--LSAAFSRQLNVNAKPFVPN------VHAAEFVPSFL-----------RGPAQPPLSPA 101
            |.:||  :|..|| .|||||..|||:      |:.||...:.:           .|||....:||
  Fly     2 AAQENTEISTKFS-TLNVNAVEFVPSFSYNSVVNVAEEAAAVVVAAAAAEETADPGPASGSATPA 65

Mouse   102 ------GAAGGDHGA--------GSGAGGPS--EPVESSQDQS-CEGSNST---VSMELSEPV-- 144
                  |:.|...||        |:||..||  .|..||...| ..||.:|   .....::|.  
  Fly    66 TTPDSVGSGGSTAGAAPPPPTAQGAGAAAPSAQPPTSSSNSASPAPGSPATTPSAGAAAADPTPI 130

Mouse   145 --------VENGETEMSPEESWE--------HKEEISEAEPGGGSSGDGRPPEESTQEMMEEEEE 193
                    :.|.||:  |.:||:        ..||:.:||...|.:    .|:.|.:::::.|| 
  Fly   131 DGLNPSDKIANNETD--PADSWDVDDAVITPEDEEVEDAEFTEGEA----TPKVSKKKVVKVEE- 188

Mouse   194 IPKPKSAVAPPGAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETW 258
                       ...|:|||||||||||||||||||||||.|||||||||||||||||:||:||:|
  Fly   189 -----------NRSKREHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESW 242

Mouse   259 YLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISAR 323
            ||||||||||||||||||||||||:|||::||||||||||||||||||||||:||||||||||||
  Fly   243 YLSWALDTNQEERDKGKTVEVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISAR 307

Mouse   324 KGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFN 388
            ||||||||::|||||||||||||||||||:||:||||||||||...||.|||:|::|:|||:|||
  Fly   308 KGEFETGFDRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVNWDQTRYNECKDKILPYLKKLGFN 372

Mouse   389 PKKDIHFMPCSGLTGANLKEQ--SDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYKDMG 451
            |.||:.|||||||:|..||:|  ...||||.|..|||::|.||:.||..|||..:||||||||||
  Fly   373 PAKDLTFMPCSGLSGYGLKDQIPETLCPWYRGPAFIPFIDELPSLNRKSDGPFIMPIVDKYKDMG 437

Mouse   452 TVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDSVAPGENLKIRLKGIEEEEILPGFI 516
            |||:||:|||:..|||.|::|||:..|.|..:.|||.|..||.||||:||:|||||||::.|||:
  Fly   438 TVVMGKVESGTARKGQNLLVMPNRTQVAVDQLFSDDFEVTSVGPGENVKIKLKGIEEEDVSPGFV 502

Mouse   517 LCDLNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRP 581
            |||..|...:|:.||||:||:|||||||.||:||:|||...|||.:.|||||||||||:||||||
  Fly   503 LCDAANPIKTGKIFDAQVVILEHKSIICAGYSAVMHIHCAAEEVTVKALICLVDKKSGDKSKTRP 567

Mouse   582 RFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLV 632
            ||||||||.|.|:..:|.||||.||.||||||||||||.||||||||||:|
  Fly   568 RFVKQDQVAIMRIECSGMICLEQFKLFPQMGRFTLRDENKTIAIGKVLKVV 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gspt1NP_666178.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..54
PAM2 64..81 CDD:284542 10/22 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 90..206 37/164 (23%)
TEF1 209..633 CDD:227581 322/426 (76%)
EF1_alpha 213..429 CDD:206670 178/217 (82%)
G1. /evidence=ECO:0000255|PROSITE-ProRule:PRU01059 218..225 6/6 (100%)
G2. /evidence=ECO:0000255|PROSITE-ProRule:PRU01059 274..278 3/3 (100%)
G3. /evidence=ECO:0000255|PROSITE-ProRule:PRU01059 295..298 2/2 (100%)
G4. /evidence=ECO:0000255|PROSITE-ProRule:PRU01059 357..360 2/2 (100%)
G5. /evidence=ECO:0000255|PROSITE-ProRule:PRU01059 399..401 1/1 (100%)
eRF3_II 438..519 CDD:293906 51/80 (64%)
eRF3_C_III 525..631 CDD:294003 79/105 (75%)
eRF3NP_001260415.1 PAM2 12..28 CDD:284542 10/16 (63%)
TEF1 191..619 CDD:227581 323/428 (75%)
EF1_alpha 197..416 CDD:206670 179/218 (82%)
eRF3_II 424..505 CDD:293906 51/80 (64%)
eRF3_C_III 511..617 CDD:294003 79/105 (75%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 365 1.000 Domainoid score I930
eggNOG 1 0.900 - - E1_COG5256
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68226
Inparanoid 1 1.050 691 1.000 Inparanoid score I687
Isobase 1 0.950 - 0 Normalized mean entropy S365
OMA 1 1.010 - - QHG54149
OrthoDB 1 1.010 - - D1150082at2759
OrthoFinder 1 1.000 - - FOG0002347
OrthoInspector 1 1.000 - - otm42717
orthoMCL 1 0.900 - - OOG6_101550
Panther 1 1.100 - - LDO PTHR23115
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2104
SonicParanoid 1 1.000 - - X149
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.820

Return to query results.
Submit another query.