DRSC/TRiP Functional Genomics Resources

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Protein Alignment SAMD11 and spe-44

DIOPT Version :9

Sequence 1:NP_001372569.1 Gene:SAMD11 / 148398 HGNCID:28706 Length:845 Species:Homo sapiens
Sequence 2:NP_502379.1 Gene:spe-44 / 182915 WormBaseID:WBGene00007732 Length:424 Species:Caenorhabditis elegans


Alignment Length:242 Identity:55/242 - (22%)
Similarity:91/242 - (37%) Gaps:40/242 - (16%)


- Green bases have known domain annotations that are detailed below.


Human    42 AAAALPPAASLPASAAGYEALLAPPLRPPRAYLSLHEAAPHLHLPRDPLALERFSATA-----AA 101
            :||::.|:..:..|..|::|                |.:.|.|....|....:.:...     .|
 Worm     7 SAASVLPSHPISGSCDGFQA----------------EGSDHHHSTMTPFQESQRNVYQILYGHPA 55

Human   102 APDF-------QPLLDNGE--PCIEVECGANRALLYVRK-LCQGSKGPSIRHRGEWLTPNEFQFV 156
            ..||       |..:..|:  |.:.|.||.....:::.. :|.|...|.|....:.|:|.:|...
 Worm    56 NDDFPRPITPLQITIPEGDASPTVPVSCGVVNGKMHLNLFMCPGIHQPCIEVGNDLLSPKQFTIR 120

Human   157 SGRETAKDWKRSIRHKGKSLKTLMSKGILQVHPPICDCPG-CRISSPVNRGR---LADKRTVALP 217
            ..:|..||||.|||....||:|.|....:..:..:..|.| |:..:.||...   |..:::....
 Worm   121 GDKERQKDWKASIRVGRSSLRTHMEAMTIDFYEHMNRCSGKCQSRNYVNAPSEEVLQARKSKRTS 185

Human   218 AARNLKKERTPSFSASDGDSDGSGPTCGRRPGLKQEDGPHIRIMKRR 264
            .|..||.|.....:..:.|:|.:     |:...|....|...:.|.|
 Worm   186 EAGQLKYEIENEMAGKEADNDDN-----RKSAKKARGRPRGSVNKPR 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SAMD11NP_001372569.1 SAND 113..185 CDD:396076 23/74 (31%)
SAM_Samd7,11 704..771 CDD:188978
spe-44NP_502379.1 SAND 77..150 CDD:128554 23/72 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4333
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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