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Protein Alignment SAMD11 and gmeb-1
DIOPT Version :9
Sequence 1: | NP_001372569.1 |
Gene: | SAMD11 / 148398 |
HGNCID: | 28706 |
Length: | 845 |
Species: | Homo sapiens |
Sequence 2: | NP_493634.4 |
Gene: | gmeb-1 / 182061 |
WormBaseID: | WBGene00015285 |
Length: | 374 |
Species: | Caenorhabditis elegans |
Alignment Length: | 149 |
Identity: | 41/149 - (27%) |
Similarity: | 65/149 - (43%) |
Gaps: | 44/149 - (29%) |
- Green bases have known domain annotations that are detailed below.
Human 62 LLAPPLRPPRAYLSLHEAAPH------------LHLPRDPLALERFSATAAAAPDFQPLLDNGEP 114
:|:..:..|:....:.|.:|| :||..:.:. |.|::.:|.|.. ||
Worm 4 ILSDGVNEPKLCKFIKEESPHKVKQEPYDDEDLVHLGSESIP----SPTSSTSPPFPT-----EP 59
Human 115 CI---------EVECGANRALLYVRK-LCQGSKGPSIRHR--------GEWLTPNEFQFVSGRET 161
.: |::|||..|.|:... :| |.||.: ||.|||.||...:.:..
Worm 60 AVQTIKLPKYMELKCGALVARLHTELFIC-----PGIREKCIEVLDCPGELLTPVEFTIKAEKSK 119
Human 162 AKDWKRSIRHKGKSLKTLM 180
.||||.:|:|.|:.|:|||
Worm 120 QKDWKGAIKHNGRMLRTLM 138
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SAMD11 | NP_001372569.1 |
SAND |
113..185 |
CDD:396076 |
30/86 (35%) |
SAM_Samd7,11 |
704..771 |
CDD:188978 |
|
gmeb-1 | NP_493634.4 |
SAND |
67..143 |
CDD:366582 |
28/77 (36%) |
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_KOG4333 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.900 |
|
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