DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grin1 and Ir8a

DIOPT Version :9

Sequence 1:NP_001359487.1 Gene:Grin1 / 14810 MGIID:95819 Length:959 Species:Mus musculus
Sequence 2:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster


Alignment Length:897 Identity:190/897 - (21%)
Similarity:338/897 - (37%) Gaps:258/897 - (28%)


- Green bases have known domain annotations that are detailed below.


Mouse   223 KNVTALLMEARDLEARVIILSASED--------DAATVYRAAAMLNMT--------------GSG 265
            |.:.||.::.: ::...:.|:.|||        :..:...|:|::::|              |.|
  Fly    43 KELDALRLDVK-VDDTTLTLTRSEDGLDMQRFCEILSTVGASAVIDLTYSHWEEGYNLVRSLGIG 106

Mouse   266 YVWLVGER------EISGNALRYAPDGIIGLQLINGKNESAHISDAVGVVAQAV-----HELLEK 319
            ||.|  ||      ::.|:.:|......:.:..:|.:       |||..:.|.:     ..|:..
  Fly   107 YVRL--ERIMRPFLDMFGDFMRQKRANNVAMVFMNAR-------DAVEAMQQMLVGYPFRTLIMD 162

Mouse   320 ENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYADGVTGRVE--------------FNEDGDRKFA 370
            .:.|||.:..:......:..|.:..:...:...:|:..:|:              |.:..||.| 
  Fly   163 ASQTDPGQHFLERIRSLRPAPTYIALFARAAAMNGIFEKVQKADLFQRPLEWHFVFLDTRDRVF- 226

Mouse   371 NY-----------------------------SIMNLQNRKLVQV--GIYNGTHVIP-------ND 397
            .|                             |...:|...|:.|  .:.|...|.|       .|
  Fly   227 KYRRQAELCTRFTLNPRAICRSMPMPDLYCGSGFTMQRAMLLNVLRSLINAAQVSPGYPLAIYQD 291

Mouse   398 RKIIWPGGETEKPRGYQMSTRLKIVTIHQEPFV-YVKP-------------------TMSDGTCK 442
            ........|...|........|.:|  |...|: |..|                   .:|.|...
  Fly   292 CNATASSSEVSDPLEKDDYNWLDMV--HWSNFLAYAPPLPHIQDQFQSPVPGLTFAVNISAGYYS 354

Mouse   443 EEFTVNGD------------------PVKKVICTGPNDTSPGS-------------PRHTVPQCC 476
            .|.....|                  |.::....|..::.|.|             .|..:| ..
  Fly   355 SEHEAKTDLAAWSSVGEMRLLNETISPARRFFRIGTAESIPWSYLRREEGTGELIRDRSGLP-IW 418

Mouse   477 YGFCVDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTIN 541
            .|:|:|.:|:|::.:||.:|:.....|..|....:.     ||:|::|:|:.|:.|..:|.|.:.
  Fly   419 EGYCIDFIIRLSQKLNFEFEIVAPEVGHMGELNELG-----EWDGVVGDLVRGETDFAIAALKMY 478

Mouse   542 NERAQYIEFSKPFKYQ-GLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFS 605
            :||.:.|:|..|:..| |::|.::|.:.|::|..||...:..:||.:..::...|:|::.:|::|
  Fly   479 SEREEVIDFLPPYYEQTGISIAIRKPVRRTSLFKFMTVLRLEVWLSIVAALVGTAIMIWFMDKYS 543

Mouse   606 PFGRFKVNSEEEEEDA-------LTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMI 663
            |:      |......|       .||..:.||:.......|.|| ||::.|.|:|...:..|.::
  Fly   544 PY------SSRNNRQAYPYACREFTLRESFWFALTSFTPQGGGE-APKAISGRMLVAAYWLFVVL 601

Mouse   664 IVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYF-RRQVELSTMYRHM 727
            ::|::||||||||.::|.:..:..:.  :|...| :..|..||.|....|| ..:....|:||..
  Fly   602 MLATFTANLAAFLTVERMQTPVQSLE--QLARQS-RINYTVVKDSDTHQYFVNMKFAEDTLYRMW 663

Mouse   728 E--------------------KHNYESAAEAI---QAVRD------------NKLHAFIWDSAVL 757
            :                    |..|.....||   |.|.|            |..:|||.|||.:
  Fly   664 KELALNASKDFKKFRIWDYPIKEQYGHILLAINSSQPVADAKEGFANVDAHENADYAFIHDSAEI 728

Mouse   758 EFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLD-KTWVRYQECDS 821
            ::|.::.|:|...||:|....:.:.:::.|.....:|.:||:..::.|.|:|. |.|       :
  Fly   729 KYEITRNCNLTEVGEVFAEQPYAVAVQQGSHLGDELSYAILELQKDRFFEELKAKYW-------N 786

Mouse   822 RSNAP--------ATLTFENMAGVFMLVAGGIVAGIFLIFIEIAYKRHKDARRKQMQLAFAAV-- 876
            :||.|        ..:|.|::.|||:....|:|..:..:.:|:.|     .::||..|....|  
  Fly   787 QSNLPNCPLSEDQEGITLESLGGVFIATLFGLVLAMMTLGMEVLY-----YKKKQNALEITQVRP 846

Mouse   877 -----------------------NVWRKNL--QDRKSGRAEPDPK-KKATFR 902
                                   ..|...:  .:.|..:..|.|. :.||||
  Fly   847 VNDSSGSGGNSSTAPPTATSTTKQAWHIPVLEAEEKPAKVSPPPSFETATFR 898

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Grin1NP_001359487.1 PBP1_iGluR_NMDA_NR1 25..404 CDD:380602 44/265 (17%)
PBP2_iGluR_NMDA_Nr1 416..820 CDD:270437 120/499 (24%)
Ion_trans_2 <622..677 CDD:369572 21/54 (39%)
CaM_bdg_C0 856..884 CDD:371136 6/54 (11%)
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 109/425 (26%)
Lig_chan 520..818 CDD:278489 80/314 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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