DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grik5 and Nmdar1

DIOPT Version :9

Sequence 1:XP_030098003.1 Gene:Grik5 / 14809 MGIID:95818 Length:1003 Species:Mus musculus
Sequence 2:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster


Alignment Length:1061 Identity:258/1061 - (24%)
Similarity:430/1061 - (40%) Gaps:229/1061 - (21%)


- Green bases have known domain annotations that are detailed below.


Mouse    51 INGII-EVPAKARVEVDIFELQRDSQY-------------------ETTDTMC-QILPKGVVSVL 94
            |.|:: ...::......|..|..|.||                   :|...:| :::...|.:|:
  Fly    41 IGGVLSNSDSEEHFSTTIKHLNFDQQYVPRKVTYYDKTIRMDKNPIKTVFNVCDKLIENRVYAVV 105

Mouse    95 ---GPSSSPASASTVSHICGEKEIPHIKVGPEETP------RLQYLRFASVSLYPSNEDVSLAVS 150
               ..:|...|.:.||:..|...||.|.:...:..      .:.:||  :|..|....||.|   
  Fly   106 VSHEQTSGDLSPAAVSYTSGFYSIPVIGISSRDAAFSDKNIHVSFLR--TVPPYYHQADVWL--- 165

Mouse   151 RILKSFNYPSASLICAKAECLLRLEELVRGFLISKETLSVRMLD--DSRDPTPLLKEIRDDKVST 213
            .:|..|.|....:|.:.       :...|..|...:|.|....|  |.|....|:.|. :.|:.:
  Fly   166 EMLSHFAYTKVIIIHSS-------DTDGRAILGRFQTTSQTYYDDVDVRATVELIVEF-EPKLES 222

Mouse   214 I---IIDANASISHLVLRLSLNLSSPLGFPRSLPLGLSCVLQASELGMTSAFYKYILTTMDFPIL 275
            .   :||...:.|.:.|..:....:.:.|           ..|.|..||...:.:|:|..     
  Fly   223 FTEHLIDMKTAQSRVYLMYASTEDAQVIF-----------RDAGEYNMTGEGHVWIVTEQ----- 271

Mouse   276 HLDGIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSA 340
                           ::|:.:   .|:.|..|.:....:.:..           :.|:|:|:.||
  Fly   272 ---------------ALFSNN---TPDGVLGLQLEHAHSDKGH-----------IRDSVYVLASA 307

Mouse   341 VRELNRSQEIGVKPLAC-TSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQR--TNYTLRILE 402
            ::|:..::.|...|..| .||..|..|..|..||:.....|.||:|.|:..|.|  ..|.:..:.
  Fly   308 IKEMISNETIAEAPKDCGDSAVNWESGKRLFQYLKSRNITGETGQVAFDDNGDRIYAGYDVINIR 372

Mouse   403 KSRQGHREIGVW-YSNRTLAMNATTLDINLSQ-------------TLANKTLVVTTILENPYVM- 452
            :.::.| .:|.: |.:....|.   :.||.|:             .:....|.:.||.|.|:|. 
  Fly   373 EQQKKH-VVGKFSYDSMRAKMR---MRINDSEIIWPG
KQRRKPEGIMIPTHLRLLTIEEKPFVYV 433

Mouse   453 -------------RRP-----NFQALSGNERFEGFCVDMLRELAELLRFRYRLRLVEDGLY---- 495
                         .||     |..|.:......|:|:|:|.||::.:.|.|.|.|..||.:    
  Fly   434 RRMGDDEFRCEPDERPCPLFNNSDATANEFCCRGYCIDLLIELSKRINFTYDLALSPDGQFGHYI 498

Mouse   496 -----GAPEPNGSWTGMVGELINRQKADLAVAAFTITAEREKVIDFSKPFMTLGISILYRVHMGR 555
                 ||......|||::|||:| ::||:.||..||..||.:.|:|||||...||:||.: ...|
  Fly   499 LRNNTGAMTLRKEWTGLIGELVN-ERADMIVAPLTINPERAEYIEFSKPFKYQGITILEK-KPSR 561

Mouse   556 KPGYFSFLDPFSPAVWLFMLLAYLAVSCVLFLAARLSPYEWYNPHPCLRARPHILENQYTLGNSL 620
            .....|||.|||..:|:.::::...|:.||:|..|.||:..:.    |.......|....|.:::
  Fly   562 SSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRFK----LSHSDSNEEKALNLSSAV 622

Mouse   621 WFPVGGFMQQG-SEIMPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPVESADDLA- 683
            ||..|..:..| .|..||:.|.|.:..||..|.:||::||||||||||.::|.:..:...:|.. 
  Fly   623 WFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLSGINDARL 687

Mouse   684 --DQTNIEYGTIHAGSTMTFFQ-----NSRYQTYQRMWNYMQSKQPSVFVKSTEEGIARVLNSRY 741
              ...|:...|:...|...:|:     ::.|:|.:.. ||..::|.   ::..::|      ...
  Fly   688 RNTMENLTCATVKGSSVDMYFRRQVELSNMYRTMEAN-NYATAEQA---IQDVKKG------KLM 742

Mouse   742 AFLLESTMNEYHRRLNCNLTQIGGLLDTKGYGIGMPLGSPFRDEITLAILQLQENNRLEILKRKW 806
            ||:.:|:..||....:|.|...|.|....|||||:..|||:.|.:|||||:..|:..:|.|.::|
  Fly   743 AFIWDSSRLEYEASKDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESGFMEKLDKQW 807

Mouse   807 WEGGRCPKE---EDHRAKGLGMENIGGIFVVLICGLIIAVFVAVMEFIWSTRRSAESEEVSVCQE 868
            ...|...:.   .:.....||::|:.|:|:::..|:...|.:.::|.|:...:..:.:.:.:.:.
  Fly   808 IFHGHVQQNCELFEKTPNTLGLKNMAGVFILVGVGIAGGVGLIIIEVIYKKHQVKKQKRLDIARH 872

Mouse   869 MLQELRHAVSCRKTSRS----RRRRRPG-----GPSRALLSLRAVREMRLSNGKLYSAGAGGDAG 924
            ...:.|..:..|||.|:    :|:...|     .|....|::...|..||              |
  Fly   873 AADKWRGTIEKRKTIRASLAMQRQYNVGLNSTHAPGTISLAVDKRRYPRL--------------G 923

Mouse   925 AHGGPQRL----------------LDDPGPPGGPRPQAPTPCTHVRVCQECRRIQALRASGAGAP 973
            ...||:|.                |.:||       |:|             ::.|....|...|
  Fly   924 QRLGPERAWPGDAADVLRIRRPYELGNPG-------QSP-------------KVMAANQPGMPMP 968

Mouse   974 PRGLGTPAEATSPPRPRPGPT 994
            ..|...|.::..|||..||.|
  Fly   969 MLGKTRPQQSVLPPRYSPGYT 989

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Grik5XP_030098003.1 PBP1_iGluR_Kainate_KA1_2 23..424 CDD:380616 83/411 (20%)
Periplasmic_Binding_Protein_Type_2 437..808 CDD:419667 130/407 (32%)
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 86/425 (20%)
ANF_receptor 58..371 CDD:279440 77/370 (21%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 131/416 (31%)
HisJ 451..>558 CDD:223904 41/108 (38%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 49/140 (35%)
Lig_chan 575..838 CDD:278489 80/276 (29%)
CaM_bdg_C0 854..882 CDD:287524 2/27 (7%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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