DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Grid1 and KaiR1D

DIOPT Version :9

Sequence 1:	NP_032192.2	Gene:	Grid1 / 14803	MGIID:	95812	Length:	1009	Species:	Mus musculus
Sequence 2:	NP_650925.1	Gene:	KaiR1D / 42473	FlyBaseID:	FBgn0038837	Length:	853	Species:	Drosophila melanogaster

Alignment Length:	919	Identity:	275/919 - (29%)
Similarity:	446/919 - (48%)	Gaps:	110/919 - (11%)

- Green bases have known domain annotations that are detailed below.

Mouse     4 LTLWLLPWICQCVTVRA-DSIIHIGAIFEENAAKDDRVFQLAVSDLSLNDDILQSEKITYSIKVI 67
            |.|.||..|..|...:: ..||.||.:|.......:..|:.||..::.:..||...|:...|:.|
  Fly     9 LPLLLLQLILNCRKAQSLPDIIKIGGLFHPADDHQELAFRQAVDRINADRSILPRSKLVAQIERI 73

Mouse    68 EANNPFQAVQEACDLMTQGILALVTSTGCASANALQSLTDAMHIPHLFVQRNPGGSPRTACHLNP 132
            ...:.|.|.:..|.|:..|:.|:.......:|:.:||:.|.|.|||| ..|......|.:|.:|.
  Fly    74 SPFDSFHAGKRVCGLLNIGVAAIFGPQSSHTASHVQSICDNMEIPHL-ENRWDYRLRRESCLVNL 137

Mouse   133 SPDGEAYTLASRPPVRLNDVMLRLVTELRWQKFVMFYDSEYDIRGLQSFLDQASRLGLDVSLQKV 197
            .|.          |..|:...:.:|....|:.|.:.|::...|..||..|.
  Fly   138 YPH----------PNTLSKAYVDIVRHWGWKTFTIIYENNDGIVRLQELLK-------------- 178

Mouse   198 DKNISHVFTSL-FTTMKTEELNRYRDTLRR--------AILLLSPQGAHSFINEAVETNLASKDS 253
                :|..|.. .|..:..:...||..|::        .:|..|.:..|..:.:|.:..:.| |.
  Fly   179 ----AHGMTPFPITVRQLSDSGDYRPLLKQIKNSAEAHIVLDCSTERIHEVLKQAQQIGMMS-DY 238

Mouse   254 HWVFVNEEISDPEILDLVHSALG--RMTVVRQIFPSAKDNQKCMRNNHRISSLLCDPQEGYLQML 316
            |...|..  .|...::|.....|  .:|..|.|      |:|.:.:..|..|:   .::|.|:..
  Fly   239 HSYLVTS--LDLHTVNLDEFRYGGTNITGFRLI------NEKIVSDVVRQWSI---DEKGLLRSA 292

Mouse   317 QISNL-----YLYDSVLMLANAFHRKLEDRKWHSMASLNCIRKSTKPWNGGRSMLDTIKKGHITG 376
            .::.:     .:||:|.:.|.|.| .|:..:...:..::|..:||  |..|.|:::.:|...:.|
  Fly   293 NLTTVRSETALMYDAVHLFAKALH-DLDTSQQIDIHPISCDGQST--WQHGFSLINYMKIVEMKG 354

Mouse   377 LTGVMEFREDSSNPYVQFEILGTTYSETFGKDMRKLATWDS--EKGLN----GSLQERPMGSRLQ 435
            ||.|::|...........:|:..|.:     .:||:.||:|  ..|:|    .|.:::.:.:.|:
  Fly   355 LTNVIKFDHQGFRTDFMLDIVELTPA-----GIRKIGTWNSTLPDGINFTRTFSQKQQEIEANLK 414

Mouse   436 GLTLKVVTVLEEPFVMVAENI--LGQPKRYKGFSIDVLDALAKALGFKYEIYQAPDGRYGHQLHN 498
            ..||.|.|:|..|:.|..|:.  |....:::|:::|::..::|:|||.|:|...|||.||.....
  Fly   415 NKTLVVTTILSNPYCMRKESAIPLSGNDQFEGYAVDLIHEISKSLGFNYKIQLVPDGSYGSLNKL 479

Mouse   499 T-SWNGMIGELISKRADLAISAITITPERESVVDFSKRYMDYSVGILIKKP-EEKISIFSLFAPF 561
            | .|||||.||:.:||||||:.:|||.|||..|||:..:|:..|.||.:|| ::..::||..:|.
  Fly   480 TGEWNGMIRELLEQRADLAIADLTITFEREQAVDFTTPFMNLGVSILYRKPIKQPPNLFSFLSPL 544

Mouse   562 DFAVWACIAAAIPVVGVLIFVLNRIQAVRSQSATQ---PRPSASATLHSAIWIVYGAFVQQGGES 623
            ...||..:|.|...|.||:|:|.:.......:.|.   .:..:..||.:.:|...|:.:|||.:.
  Fly   545 SLDVWIYMATAYLGVSVLLFILAKFTPYEWPAYTDAHGEKVESQFTLLNCMWFAIGSLMQQGCDF 609

Mouse   624 SVNSVAMRIVMGSWWLFTLIVCSSYTANLAAFLTVSRMDNPIRTFQDLSKQLEMSYGTVRDSAVY 688
            ...:::.|:|.|.||.||||:.|||||||||||||.|||:||.:.:||:||..:.||.::..:..
  Fly   610 LPKALSTRMVAGIWWFFTLIMISSYTANLAAFLTVERMDSPIESAEDLAKQTRIKYGALKGGSTA 674

Mouse   689 EYFRAKGTNPLEQDSTFAELWRTISKNGGADNCVSNPSEGI-RKAK-KGNYAFLWDVAVVEYAAL 751
            .:||.      .:.||:..:|..:.....:....|| .||: |.|| ||:||||.:...:||  :
  Fly   675 AFFRD------SKISTYQRMWSFMESARPSVFTASN-GEGVERVAKGKGSYAFLMESTSIEY--V 730

Mouse   752 TDDDCSVTVIGNSISSKGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWPHT---GRCDL 813
            |:.:|.:|.:|..:.:|.||||....||||...:..||:||:.|.|.:||.|||...   |:|.:
  Fly   731 TERNCELTQVGGMLDTKSYGIATPPNSPYRTAINSVILKLQEEGKLHILKTKWWKEKRGGGKCRV 795

Mouse   814 -TSHSSTQTEGKSLKLHSFAGVFCILAIGLLLACLVAALELWWNSNRCHQETPKEDKEVNLEQVH 877
             ||.||  :....|.|.:..|||.:|..|:.:||::|..|..|.|.:.              .|.
  Fly   796 ETSKSS--SAANELGLANVGGVFVVLMGGMGVACVIAVCEFVWKSRKV--------------AVE 844

Mouse   878 RRINSLMDE 886
            .|::::::|
  Fly   845 ERLSAILNE 853

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Grid1	NP_032192.2	Interaction with CBLN1. /evidence=ECO:0000269\|PubMed:27418511	21..436		99/436 (23%)
		PBP1_iGluR_delta_1	25..423	CDD:107387	95/419 (23%)
		PBP2_iGluR_delta_1	436..806	CDD:270448	147/378 (39%)
		Disordered. /evidence=ECO:0000256\|SAM:MobiDB-lite	931..960
KaiR1D	NP_650925.1	PBP1_iGluR_Kainate	31..397	CDD:107377	94/414 (23%)
		ANF_receptor	42..378	CDD:279440	84/379 (22%)
		Periplasmic_Binding_Protein_Type_2	415..785	CDD:304360	147/378 (39%)
		Lig_chan	547..823	CDD:278489	106/286 (37%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG1052
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000021
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.810