DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grid1 and Nmdar1

DIOPT Version :9

Sequence 1:NP_032192.2 Gene:Grid1 / 14803 MGIID:95812 Length:1009 Species:Mus musculus
Sequence 2:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster


Alignment Length:1058 Identity:243/1058 - (22%)
Similarity:442/1058 - (41%) Gaps:196/1058 - (18%)


- Green bases have known domain annotations that are detailed below.


Mouse    22 SIIHIGAIFEENAAKDDRVFQLAVSDLSLNDDILQSEKITYSIKVIEAN-NPFQAVQEACD-LMT 84
            |..:||.:...:.:::.  |...:..|:.:...: ..|:||..|.|..: ||.:.|...|| |:.
  Fly    37 STYNIGGVLSNSDSEEH--FSTTIKHLNFDQQYV-PRKVTYYDKTIRMDKNPIKTVFNVCDKLIE 98

Mouse    85 QGILALVTS----TGCASANALQSLTDAMHIPHLFVQRNPGGSPRTACHLNPSPDGEAYTLASRP 145
            ..:.|:|.|    :|..|..|:...:....||.:.:............|::        .|.:.|
  Fly    99 NRVYAVVVSHEQTSGDLSPAAVSYTSGFYSIPVIGISSRDAAFSDKNIHVS--------FLRTVP 155

Mouse   146 P-VRLNDVMLRLVTELRWQKFVMFYDSEYDIRGL--------QSFLDQAS-RLGLDVSLQKVDKN 200
            | ....||.|.:::...:.|.::.:.|:.|.|.:        |::.|... |..:::.::...|.
  Fly   156 PYYHQADVWLEMLSHFAYTKVIIIHSSDTDGRAILGRFQTTSQTYYDDVDVRATVELIVEFEPKL 220

Mouse   201 ISHVFTSLFTTMKTEELNRYRDTLRRAILLLSPQGAHSFINEAVETNLASKDSHWVFVNEEISDP 265
            .|  ||.....|||.:...|       ::..|.:.|.....:|.|.|:..:...|:...:.:...
  Fly   221 ES--FTEHLIDMKTAQSRVY-------LMYASTEDAQVIFRDAGEYNMTGEGHVWIVTEQALFSN 276

Mouse   266 EILDLVHSALGRMTVVRQIFPSAKDNQKCMRNNHRISSLLCDPQEGYLQMLQISNLYLYDSVLML 330
            ...|   ..||                  ::..|..|      .:|:::          |||.:|
  Fly   277 NTPD---GVLG------------------LQLEHAHS------DKGHIR----------DSVYVL 304

Mouse   331 ANAFHRKLEDRKWHSMASLNCIRKSTKPWNGGRSMLDTIKKGHITGLTGVMEFREDSSNPYVQFE 395
            |:|. :::...:..:.|..:| ..|...|..|:.:...:|..:|||.||.:.|.::....|..::
  Fly   305 ASAI-KEMISNETIAEAPKDC-GDSAVNWESGKRLFQYLKSRNITGETGQVAFDDNGDRIYAGYD 367

Mouse   396 ILGTTYSE---TFGK----DMR---KLATWDSEKGLNGSLQERPMGSRLQGLTLKVVTVLEEPFV 450
            ::.....:   ..||    .||   ::...|||....|..:.:|.|..:. ..|:::|:.|:|||
  Fly   368 VINIREQQKKHVVGKFSYDSMRAKMRMRINDSEIIWPGKQRRKPEGIMIP-THLRLLTIEEKPFV 431

Mouse   451 MVA----ENILGQPKR-----------------YKGFSIDVLDALAKALGFKYEIYQAPDGRYGH 494
            .|.    :....:|..                 .:|:.||:|..|:|.:.|.|::..:|||::||
  Fly   432 YVRRMGDDEFRCEPDERPCPLFNNSDATANEFCCRGYCIDLLIELSKRINFTYDLALSPDGQFGH 496

Mouse   495 QL--HNT-------SWNGMIGELISKRADLAISAITITPERESVVDFSKRYMDYSVGILIKKPEE 550
            .:  :||       .|.|:||||:::|||:.::.:||.|||...::|||.:....:.||.|||..
  Fly   497 YILRNNTGAMTLRKEWTGLIGELVNERADMIVAPLTINPERAEYIEFSKPFKYQGITILEKKPSR 561

Mouse   551 KISIFSLFAPFDFAVWACIAAAIPVVGVLIFVLNRIQAVR--SQSATQPRPSASATLHSAIWIVY 613
            ..::.|...||...:|..:..::.||.:::::|:|.....  ..|.:......:..|.||:|..:
  Fly   562 SSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRFKLSHSDSNEEKALNLSSAVWFAW 626

Mouse   614 GAFVQQG-GESSVNSVAMRIVMGSWWLFTLIVCSSYTANLAAFLTVSRMDNPIRTFQD--LSKQL 675
            |..:..| ||.:..|.:.|::...|..|.:|:.:||||||||||.:.|....:....|  |...:
  Fly   627 GVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLSGINDARLRNTM 691

Mouse   676 E-MSYGTVRDSAVYEYFRAKGTNPLEQDSTFAELWRTISKNGGADNCVSNPSEGIRKAKKGN-YA 738
            | ::..||:.|:|..|||        :....:.::||:..|..|     ...:.|:..|||. .|
  Fly   692 ENLTCATVKGSSVDMYFR--------RQVELSNMYRTMEANNYA-----TAEQAIQDVKKGKLMA 743

Mouse   739 FLWDVAVVEYAALTDDDCSVTVIGNSISSKGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQK 803
            |:||.:.:||.|  ..||.:...|......||||.||.|||:.|..:..|||..::|.::.|.::
  Fly   744 FIWDSSRLEYEA--SKDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESGFMEKLDKQ 806

Mouse   804 WWPH---TGRCDLTSHSSTQTEGKSLKLHSFAGVFCILAIGLLLACLVAALELWWNSNRCHQE-- 863
            |..|   ...|:|...:.     .:|.|.:.||||.::.:|:.....:..:|:.:..::..::  
  Fly   807 WIFHGHVQQNCELFEKTP-----NTLGLKNMAGVFILVGVGIAGGVGLIIIEVIYKKHQVKKQKR 866

Mouse   864 -------------TPKEDKEVNLEQVHRR-----INSLMDEDIAHKQISPASIELSALEMGGLAP 910
                         |.::.|.:......:|     :||      .|   :|.:|.|:..:......
  Fly   867 LDIARHAADKWRGTIEKRKTIRASLAMQRQYNVGLNS------TH---APGTISLAVDKRRYPRL 922

Mouse   911 SQALEPTREYQNTQLSVSTFLP--EQSSHGTSRTLSSGPSSNLPLPLSSSATMPSIQCKHRSPNG 973
            .|.|.|.|.:......|.....  |..:.|.|..:.:.....:|:|:                  
  Fly   923 GQRLGPERAWPGDAADVLRIRRPYELGNPGQSPKVMAANQPGMPMPM------------------ 969

Mouse   974 GLFRQSPVKTPIPMSFQP 991
             |.:..|.::.:|..:.|
  Fly   970 -LGKTRPQQSVLPPRYSP 986

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Grid1NP_032192.2 Interaction with CBLN1. /evidence=ECO:0000269|PubMed:27418511 21..436 87/439 (20%)
PBP1_iGluR_delta_1 25..423 CDD:107387 83/423 (20%)
PBP2_iGluR_delta_1 436..806 CDD:270448 122/406 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..960 5/30 (17%)
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 84/426 (20%)
ANF_receptor 58..371 CDD:279440 73/369 (20%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 123/416 (30%)
HisJ 451..>558 CDD:223904 34/106 (32%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 39/134 (29%)
Lig_chan 575..838 CDD:278489 83/282 (29%)
CaM_bdg_C0 854..882 CDD:287524 1/27 (4%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.