DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gria1 and Ir7e

DIOPT Version :9

Sequence 1:NP_001106796.1 Gene:Gria1 / 14799 MGIID:95808 Length:907 Species:Mus musculus
Sequence 2:NP_001138176.1 Gene:Ir7e / 7354417 FlyBaseID:FBgn0259189 Length:608 Species:Drosophila melanogaster


Alignment Length:858 Identity:125/858 - (14%)
Similarity:242/858 - (28%) Gaps:391/858 - (45%)


- Green bases have known domain annotations that are detailed below.


Mouse    61 IVNISDSFEMTY-----RFCSQFSKGVYAIF---GFYERRTVNMLTSFCGALHVCFITPSFPVDT 117
            |::::.|..:|.     ..|:.::|.:..:|   |....:.||:|..          .|..||..
  Fly    37 ILSVTPSLVLTLCCRSNHTCNFYNKMMSTLFREWGLAPLQIVNVLRG----------VPWHPVPG 91

Mouse   118 SNQFVL----------QLRPELQEALISIIDHYKWQTFVYIYDADRGLSVLQRVLDTAAEKNWQV 172
            ...|.:          ::|.|......:..:||    |:::...||   :||..:....:..|: 
  Fly    92 RRHFNVIFTDSFAAFEEIRMEYYSREYNYNEHY----FIFLQARDR---LLQGEMRLIFDYCWR- 148

Mouse   173 TAVNILTTTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMD 237
                        ||::...::.:|..               |.|:.......|.|      |..|
  Fly   149 ------------YRLIHCSIQVQKSN---------------GDILFYSYYPFGEH------GCSD 180

Mouse   238 ID---LNKFKESGANVTGFQLVNYTDTIPARIMQ---------QWRT-------SDARDHTRVDW 283
            ::   :|::       .|..||. .|..|.::..         .|..       .|..:..||:.
  Fly   181 MEPQLINRY-------NGSMLVE-PDLFPRKLRNFFGCPLRCALWDVPPFLTLDEDQEEVLRVNG 237

Mouse   284 -----------KRPKYTSALTYDGVKVMAEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGIDI 337
                       ::..:|.|:....|.:..||.:.|||..:|::..|                   
  Fly   238 GYEGRLLLALAEKMNFTIAVRKVHVNMRDEALEMLRRDEVDLTLGG------------------- 283

Mouse   338 QRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVPAATDAQAGGDNS 402
               ::|....|:......|                                              
  Fly   284 ---IRQTVARGMVATSSHN---------------------------------------------- 299

Mouse   403 SVQNRTYIVTTILEDPYVMLKKNANQFEGNDRYEGYCVELAA-EIAKHVGYSYRLEIVSDGKYGA 466
              .::|..|..:|...|                     ||:: :|   :.|.|||:|        
  Fly   300 --YHQTREVFGVLASSY---------------------ELSSFDI---LFYPYRLQI-------- 330

Mouse   467 RDPDTKAWNGMVG--------ELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQK 523
                   |.|::|        :|:.||           ::||.                      
  Fly   331 -------WMGILGVVALSALIQLIVGR-----------MLRER---------------------- 355

Mouse   524 SKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIF 588
                       :....|:.:...::|:.::                                   
  Fly   356 -----------MGSRFWLNLELVFVGMPLL----------------------------------- 374

Mouse   589 NSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFL----------TVERM 643
                         .|   |||.:.|:...:...:||||.:.|...|...:          |:|.:
  Fly   375 -------------EC---PRSHTARLYCVMLMMYTLIIRTIYQGLLYHLIRTHQLNRWPQTIESL 423

Mouse   644 V--------SPI--ESAEDLAKQTEIAYGTLEAGSTKEFFRRSKIAVFEKMWTYMKSAEPSVFVR 698
            |        :||  |..:::.....:.:..|||.|                     ..:|..|:.
  Fly   424 VQKNFTVVLTPIVQEVLDEIPSVQHMRFRLLEANS---------------------ELDPLYFLE 467

Mouse   699 TTEEGMIRVRKSKGKYAYLLESTMNEYIE-QRKPCDTMKVGGNLDSKGYGIATP----------- 751
            ...:    :|:      ::..|.::.:|. .|...|.:...|...|..:....|           
  Fly   468 ANHQ----LRQ------HVTASALDIFIHFNRLSADKVHQRGEQGSGAHFEIVPEDIISMQLTMY 522

Mouse   752 --KGSALRGPVNLAVLKLSEQGVLDKLKSKWWYDKGECGSKDSGSKDKTSALSLSNVAGVFYILI 814
              |.|.|...:|..::.:...|:| .:.|:|     |.......::.....|....:..:|.:::
  Fly   523 LAKHSFLIDQLNEEIMWMRSVGLL-SVWSRW-----ELSESYLRNEQSFQVLGTMELYAIFLMVL 581

Mouse   815 GGLGLAMLVALIE 827
            .||.:.:||.::|
  Fly   582 VGLIVGLLVFILE 594

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Gria1NP_001106796.1 PBP1_iGluR_AMPA_GluR1 26..389 CDD:107385 56/375 (15%)
ANF_receptor 37..372 CDD:279440 56/358 (16%)
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 61/423 (14%)
Glutamate binding. /evidence=ECO:0000250 492..494 0/1 (0%)
Lig_chan 538..817 CDD:278489 44/312 (14%)