DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gria1 and Ir7d

DIOPT Version :9

Sequence 1:NP_001106796.1 Gene:Gria1 / 14799 MGIID:95808 Length:907 Species:Mus musculus
Sequence 2:NP_001138175.1 Gene:Ir7d / 7354416 FlyBaseID:FBgn0259190 Length:594 Species:Drosophila melanogaster


Alignment Length:448 Identity:79/448 - (17%)
Similarity:155/448 - (34%) Gaps:118/448 - (26%)


- Green bases have known domain annotations that are detailed below.


Mouse   418 PYVMLK-KNANQFEGNDRYEGYCVELAAEIAKHVGYSYRLEIVSD--GKYGARDPDTKAWNGMVG 479
            ||:.:. |:::..:|.|..:|..:.:   :|:.:.::.:| |.::  |..|........:.|...
  Fly   221 PYMRINWKSSDPMDGLDGLDGLLLRI---VARKMNFTLKL-IPNEPNGLIGGSSFMNGTFTGAYK 281

Mouse   480 ELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIV 544
            .|...||::.:.....|..|...::.:.|:..:...|::    :::.|         |.|:..::
  Fly   282 MLRERRANITIGCAACTPERSTFLEATSPYSQMSYIIVL----QARGG---------YSIYEVML 333

Mouse   545 FAYIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQGCDISPRS 609
            |.:  ......|:|......|                     |..|.|               |.
  Fly   334 FPF--EKYTWLLLSTILGLHW---------------------IVGSRW---------------RM 360

Mouse   610 LSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLEAGSTKEFFR 674
            .|..:.|.:.|.|  :|.:||.|::..|:. ...|.|.....|.|......:.|..|.     :|
  Fly   361 PSPILAGWMLWIF--VIRASYEASVFNFIQ-NSPVKPSPRTLDQALSGGFRFITDHAS-----YR 417

Mouse   675 RS-KIAVFEKMWTYMKSAEP-SVFVRTTE---------------EGMIRVRKSKGKYAYLLESTM 722
            .: ||..|:.. |.:.:.:| .||....:               :.::|.||.:.:...|.|..:
  Fly   418 MTLKIPSFQGK-TLISAGQPVDVFDALLKAPWKTGAFTSRAFLADHLVRHRKHRNQLVILAEKIV 481

Mouse   723 NEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRGPVNLAVLKLSEQGVL---------DKLKS 778
            :..:     |               :..|.||.....:|..:..:...|:.         |.|.:
  Fly   482 DNML-----C---------------MYFPHGSYFAWEINKLLFNMRSFGIFQHHSQILAWDNLPT 526

Mouse   779 KWWYDKGECGSKDSGSKDKTS---ALSLSNVAGVFYILIGGLGLAMLVALIEFCYKSR 833
            .  .|....|.:...|.:..:   |.|:|.|......|:|.|.::::|..:|...:.|
  Fly   527 T--TDTDTPGKRIHSSTESVATGFAESMSFVVAALNCLMGALCISIVVFGLELLSRRR 582

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Gria1NP_001106796.1 PBP1_iGluR_AMPA_GluR1 26..389 CDD:107385
ANF_receptor 37..372 CDD:279440
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 67/397 (17%)
Glutamate binding. /evidence=ECO:0000250 492..494 0/1 (0%)
Lig_chan 538..817 CDD:278489 54/307 (18%)