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Protein Alignment Gria1 and Ir94d

DIOPT Version :9

Sequence 1:	NP_001106796.1	Gene:	Gria1 / 14799	MGIID:	95808	Length:	907	Species:	Mus musculus
Sequence 2:	NP_001138099.1	Gene:	Ir94d / 7354412	FlyBaseID:	FBgn0259193	Length:	593	Species:	Drosophila melanogaster

Alignment Length:	440	Identity:	79/440 - (17%)
Similarity:	144/440 - (32%)	Gaps:	152/440 - (34%)

- Green bases have known domain annotations that are detailed below.

Mouse   466 ARDPDTKAWNGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPG--- 527
            |||......||.| ::..|    |:.|      :.....:|.|...:...:|:..|::....
  Fly   239 ARDLIASVQNGSV-QIALG----AIYP------QVPYTGYSYPIELMSWCLMMPVPEEVPHSQLY 292

Mouse   528 --VFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSR-------FSPYEWHSEEFEEGRDQTTSDQSN 583
              |||   |:|:.|   .:.|.:.:|:.|.:..|       ||.|..|.....
  Fly   293 SMVFS---PMAFGI---TIVAMVLISLTLSMALRLHGYRVSFSEYFLHDSCLR------------ 339

Mouse   584 EFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIE 648
              |:.:..::.:   ::....|....|...::|       |:|.|.|.:..:.|:|.......:.
  Fly   340 --GVLSQSFYEV---LRAPALIKAMYLVICLLG-------LLITSWYNSYFSTFVTSAPRFPQLT 392

Mouse   649 SAEDLAKQTEIAYGTLEAGSTKEFFRRSKIAVFEKMWTYMKSAEPSVFVRTTEEGMIRVRKSKGK 713
            |.|.:                    |.|.|.:.  :|            :...|.::...::..|
  Fly   393 SYESI--------------------RHSNIKIV--IW------------KPEYEMLLFFSENMEK 423

Mouse   714 YA--YLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATP------------------------- 751
            |:  :.|:....|::..|...||.          ||...|
  Fly   424 YSSIFQLQEDYKEFLHLRDSFDTR----------YGYMMPMEKWSLMKEQQRVFSSPLFSLQDDL 478

Mouse   752 -------------KGSALRGPVNLAVLKLSEQGVLDKLKSKWWYD--------KGECGSKDSGSK 795
                         |.|..:.|.:..:|.::..|:|.:     |.|        .|:.|.:|.|..
  Fly   479 CVFHTVPIVFPMVKNSIFKEPFDRLILDVTATGLLSR-----WRDMSFTEMIKAGQLGLEDRGHP 538

Mouse   796 DKTSALSLSNVAGVFYILIGGLGLAMLVALIE-FCYKSRSESKRMK-GFC 843
            .:..|:.:.::..::..:...||||.:|.|:| .|:......:.|| .||
  Fly   539 KEFRAMKVGDLIQIWRFVGWMLGLATIVFLLELICFWRHKMWQNMKYMFC 588

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.