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Protein Alignment Gria1 and Ir85a

DIOPT Version :9

Sequence 1:	NP_001106796.1	Gene:	Gria1 / 14799	MGIID:	95808	Length:	907	Species:	Mus musculus
Sequence 2:	NP_649833.1	Gene:	Ir85a / 41052	FlyBaseID:	FBgn0037630	Length:	605	Species:	Drosophila melanogaster

Alignment Length:	374	Identity:	66/374 - (17%)
Similarity:	128/374 - (34%)	Gaps:	96/374 - (25%)

- Green bases have known domain annotations that are detailed below.

Mouse   487 DVA-----VAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFA 546
            |||     :.|.|.....|..:..::.    .:.:::.| .|:.|..::........:|..|:.:
  Fly   272 DVAMNIRFLVPDTFRKQAESTVSHTRD----DLCVIVPK-AKTAPTFWNIFRSFGSLVWALILVS 331

Mouse   547 YIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQGCDISPRSLS 611
            .:..:|..:::                        .:|.|......|: ||.......|.|.. |
  Fly   332 VLVANVFCYIL------------------------KSEVGRVPMQLFA-GALTMPMTQIPPNH-S 370

Mouse   612 GRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAK--------------------- 655
            .|:....|.:|.|:|.|::..||.:.:..:..:..|.....||:
  Fly   371 IRLFLIFWLYFGLLICSAFKGNLTSMMVFQPYLPDINQLGALARSHYHIIIRPRHVKHIQHFLTL 435

Mouse   656 ----QTEIAYGTLEAGSTK--EFFRRSKIAVFEKMWTYMKSAEPSVFVRTTEEGMIRVRKSKGKY 714
                ::.|....||...|:  |..|.:.|     .:.|::....:.|...:     ||....|:.
  Fly   436 GHKHESRIREQMLEVSDTQMYEMMRNNDI-----RFAYLEKYHIARFQVNS-----RVHMHLGRP 490

Mouse   715 AYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRGPVNLAVLKLSEQG---VLDKL 776
            .:.|   ||..:   .|...:.:            .|.||...|.::..:....|.|   ..|::
  Fly   491 LFHL---MNSCL---VPFHAVYI------------VPYGSPYLGFLDSLIRSSHEFGFERYWDRI 537

Mouse   777 KSKWWYDKG-ECGSKDSGS-KDKTSALSLSNVAGVFYILIGGLGLAMLV 823
            .:..:...| :..::..|| .|:...|.|.:...||.:.:.|:|:|.:|
  Fly   538 MNSAFIKSGVKVVNRRRGSGNDEPVVLKLQHFHAVFALWLVGIGMACIV 586

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.