DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gria1 and Ir60a

DIOPT Version :9

Sequence 1:NP_001106796.1 Gene:Gria1 / 14799 MGIID:95808 Length:907 Species:Mus musculus
Sequence 2:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster


Alignment Length:741 Identity:117/741 - (15%)
Similarity:241/741 - (32%) Gaps:229/741 - (30%)


- Green bases have known domain annotations that are detailed below.


Mouse   201 VVDCESERLNAILGQIVKLE------KNGIG---------------------YHYILANLGFMDI 238
            :|:..:|..|.::..:.:.:      |.|:|                     |:.:|.:...:..
  Fly    24 IVNLSNETANTVIFMLPEKDLGPDVWKAGVGCLDSFAQIFFFRNPKERFTRAYNLMLVHAFHLSS 88

Mouse   239 DLNKFKESGANVTGF-QLVNYTDTIPA----RIMQQWRTSDARDHTRVDWKRPKYTSALTYDGVK 298
            ..::.:|      || :|:|...|.|.    ..:.|.|.:...:.|.....:.:...|..|..|.
  Fly    89 PADQIQE------GFSKLINEAVTNPGPPDREELFQMRVASDYNITNGTEDKGELILADNYVIVV 147

Mouse   299 VMAEAFQSLRRQRIDISRRGNAGD---CLANPAV----PWGQGIDIQRALQQVRFEGLTGNVQFN 356
            ...:..:.|.:::|...|..|.|.   .|.:.|.    |.|...:|.:.|.::.:......:..|
  Fly   148 DSVDRLKELMKKKIVEMRSWNPGARFLVLFHNATCRNRPLGVASNIFKDLMEMFYVHRVALLYAN 212

Mouse   357 EKGRRTNYTLHV------IEMKHDGIRKIGYWNEDDKFVPAATDAQAGGDN----SSVQNRTYIV 411
            .   ..||.|.|      :..:...::.:|..: |.|..|.....:|...:    .|.:|.|:..
  Fly   213 S---TMNYNLLVNDYYSNVNCRILNVQSVGQCH-DGKLYPNNAVVKASMQDYVSGFSPRNCTFFA 273

Mouse   412 TTILEDPYVM-------------LKKNANQFEGNDRYEGYC-VELAAEIAKHVGYSYRLEIVSDG 462
            .:.:..|:|.             ..||..:|:.|..    | :|...|:              ||
  Fly   274 CSSISAPFVEADCILGLEMRILGFMKNRLKFDVNQT----CSLESRGEM--------------DG 320

Mouse   463 KYGARDPDTKAWNGMVGELVYGRADVAVA---PLTITLVREEVIDF---SKPFMSLGISIMIKKP 521
            ...        |.|::|::.....|....   |      ..||.|.   |..::....:..||..
  Fly   321 PAN--------WTGLLGKVQNNECDFVFGGYYP------DNEVADHFWGSDTYLQDAHTWYIKMA 371

Mouse   522 QKSKPGVFSFLDPLAYEIWMCIV-----FAYIGVSVVLFLVSRFSPYEWHS-------EEFEEGR 574
            .: :|.            |..:|     :.:||..::|.:...|    |.:       .::.:..
  Fly   372 DR-RPA------------WQALVGIFEAYTWIGFILILIISWLF----WFTLVMILPEPKYYQQL 419

Mouse   575 DQTTSDQSNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 639
            ..|.         .|:|..::...:|:    .|...:.|:.......:.|.::::||:       
  Fly   420 SLTA---------INALAVTISIAVQE----RPICETTRLFFMALTLYGLNVVATYTS------- 464

Mouse   640 VERMVSPIES---AEDLAKQTEIAYGTLEAG---STKEFFRRSKIAVFEKMWTYMKSAEPSVFVR 698
              :|::..:.   ...|.:.||:....:..|   .::::|...     :.||.:           
  Fly   465 --KMIATFQDPGYLHQLDELTEVVAAGIPFGGHEESRDWFEND-----DDMWIF----------- 511

Mouse   699 TTEEGMIRVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGN--LDSKGYGIATP--------KG 753
                           ..|.:..   |:|.|.|..:.:|.|..  |.::.|.:.:|        ..
  Fly   512 ---------------NGYNISP---EFIPQSKNLEAVKWGQRCILSNRMYTMQSPLADVIYAFPN 558

Mouse   754 SALRGPVNL-------------AVLKL-SEQGVLDKLKSKWWYDK---GECGSKDSGSKDKTSAL 801
            :....||.:             ::::| .:.|:..|:.:.:.|:.   ...........:....|
  Fly   559 NVFSSPVQMIMKAGFPFLFEMNSIIRLMRDVGIFQKIDADFRYNNTYLNRINKMRPQFPETAIVL 623

Mouse   802 SLSNVAGVFYILIGGLGLAMLVALIE 827
            :..::.|.|:||:.|...|.|..:.|
  Fly   624 TTEHLKGPFFILVVGSCWAALTFIGE 649

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Gria1NP_001106796.1 PBP1_iGluR_AMPA_GluR1 26..389 CDD:107385 40/232 (17%)
ANF_receptor 37..372 CDD:279440 37/215 (17%)
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 65/445 (15%)
Glutamate binding. /evidence=ECO:0000250 492..494 1/1 (100%)
Lig_chan 538..817 CDD:278489 45/323 (14%)