DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gria1 and Ir21a

DIOPT Version :9

Sequence 1:NP_001106796.1 Gene:Gria1 / 14799 MGIID:95808 Length:907 Species:Mus musculus
Sequence 2:NP_001097043.1 Gene:Ir21a / 33157 FlyBaseID:FBgn0031209 Length:842 Species:Drosophila melanogaster


Alignment Length:862 Identity:162/862 - (18%)
Similarity:294/862 - (34%) Gaps:233/862 - (27%)


- Green bases have known domain annotations that are detailed below.


Mouse   140 YKWQTFV------YIYDADRGLS----VLQRVLDTAAEKNWQVTAVNILT-TTEEGYRM------ 187
            |.|...|      :..:.||..|    .:.|.|....:.|.::..|.:.. ..|..:|.      
  Fly     3 YYWVALVLFTAQAFSIEGDRSASYQEKCISRRLINHYQLNKEIFGVGMCDGNNENEFRQKRRIVP 67

Mouse   188 LFQDLEKKKERLV-----VVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDIDLNK----- 242
            .||...:.:..|:     |.....|:.|:::|.:     |.|...|           |||     
  Fly    68 TFQGNPRPRGELLASKFHVNSYNFEQTNSLVGLV-----NKIAQEY-----------LNKCPPVI 116

Mouse   243 ----FKESGANVTGFQLVNYTDTIP-----ARIMQQWRTSDARDHTRVDWKRPKYTSALTYDGVK 298
                |.|..   .|..|.|...|||     ..|...:...:.|..:.:|.....|...|:     
  Fly   117 YYDSFVEKS---DGLILENLFKTIPITFYHGEINADYEAKNKRFTSHIDCNCKSYILFLS----- 173

Mouse   299 VMAEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNV---------Q 354
                  ..|..::| :..:..:...|.:.:..|        .|:......|:.|:         .
  Fly   174 ------DPLMTRKI-LGPQTESRVVLVSRSTQW--------RLRDFLSSELSSNIVNLLVIGESL 223

Mouse   355 FNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVPAATDAQAGGDNSSVQNRTYIVTTILEDPY 419
            ..:..|...|.|:..::..||:                      |.|:.|...::| ...|..|:
  Fly   224 MADPMRERPYVLYTHKLYADGL----------------------GSNTPVVLTSWI-KGALSRPH 265

Mouse   420 VMLKKNANQF----------------------------EGNDRYEGYCVELAAEIAKHVGYSYRL 456
            :.|..:..||                            .|..|::|....|...|:|.:.:|..:
  Fly   266 INLFPSKFQFGFAGHRFQISAANQPPFIFRIRTLDSSGMGQLRWDGVEFRLLTMISKRLNFSIDI 330

Mouse   457 EIVSDGKYGARDPDTKAWNGMVG----ELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGIS-- 515
                     ...|......|:|.    :::....|:.::.:.||  :|.::|.:   ||:|.|  
  Fly   331 ---------TETPTRSNTRGVVDTIQEQIIERTVDIGMSGIYIT--QERLMDSA---MSVGHSPD 381

Mouse   516 --IMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTT 578
              ..|....|:.|...:.:.|..:.:|:.::..|:|....:....|.                |.
  Fly   382 CAAFITLASKALPKYRAIMGPFQWPVWVALICVYLGGIFPIVFTDRL----------------TL 430

Mouse   579 SDQSNEFG-IFNSLWFSLG------AFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAA 636
            |.....:| :.|..|:..|      :|..:....:.|..|.|::.|.:|.||:||.|.||.::.|
  Fly   431 SHLMGNWGEVENMFWYVFGMFTNAFSFTGKYSWSNTRKNSTRLLIGAYWLFTIIITSCYTGSIIA 495

Mouse   637 FLTVERMVSPIESAEDLAKQTEIAYGTLEAGSTKEFFRRSKIAVFEKMWTYMKSAEPSVFVRTTE 701
            |:|:......::|..||. ......|||..|..:.:|:.|......:::..|:      ||.:.:
  Fly   496 FVTLPAFPDTVDSVLDLL-GLFFRVGTLNNGGWETWFQNSTHIPTSRLYKKME------FVGSVD 553

Mouse   702 EGMIRVRKS-KGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKG-------------YGIATPK 752
            ||:..|.:| ...||:|......||:.|....|.     |:..:.             .|...|:
  Fly   554 EGIGNVTQSFFWNYAFLGSKAQLEYLVQSNFSDE-----NISRRSALHLSEECFALFQIGFLFPR 613

Mouse   753 GSALRGPVNLAVLKLSEQGVLDKLKSK--WWYDKGECGSKDSGSKDKT--------SALSLSNVA 807
            .|..:..::..:|...:.|::.|:.::  |...:...|.....|...:        ..|:.::..
  Fly   614 ESVYKIKIDSMILLAQQSGLIAKINNEVSWVMQRSSSGRLLQASSSNSLREIIQEERQLTTADTE 678

Mouse   808 GVFYILIGG--LGLAMLVALIEFCYKSRSESKRMKGFCLIPQQSINEAIRTSTLPRNSGAGASGG 870
            |:|.::..|  ||...||            |:.:.|.....:|.|..:.:::.   :|.:.||.|
  Fly   679 GMFLLMALGYFLGATALV------------SEIVGGITNKCRQIIKRSRKSAA---SSWSSASSG 728

Mouse   871 SGSGENGRVVSQDFPKS 887
            |....|...:|.|..|:
  Fly   729 SMLRTNAEQLSHDKRKA 745

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Gria1NP_001106796.1 PBP1_iGluR_AMPA_GluR1 26..389 CDD:107385 50/293 (17%)
ANF_receptor 37..372 CDD:279440 48/276 (17%)
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 86/439 (20%)
Glutamate binding. /evidence=ECO:0000250 492..494 0/1 (0%)
Lig_chan 538..817 CDD:278489 63/311 (20%)