DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gria1 and Ir8a

DIOPT Version :9

Sequence 1:NP_001106796.1 Gene:Gria1 / 14799 MGIID:95808 Length:907 Species:Mus musculus
Sequence 2:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster


Alignment Length:886 Identity:212/886 - (23%)
Similarity:362/886 - (40%) Gaps:205/886 - (23%)


- Green bases have known domain annotations that are detailed below.


Mouse   142 WQTFVYIYDADRGLSVLQRVLDTAAEKNWQVTAVNI-LTTTEEGYRMLFQDLEKKKERLVVVDCE 205
            |...|...:.|..::::.:.|| |...:.:|....: ||.:|:|.     |:::..|.|..|...
  Fly    25 WIEPVQRAEFDTDIAMVLKELD-ALRLDVKVDDTTLTLTRSEDGL-----DMQRFCEILSTVGAS 83

Mouse   206 S----------ERLNAILGQIVKLEKNGIGYHYILANL-GFMDIDLNKFKESGANVTGFQLVNYT 259
            :          |..|.:       ...||||..:...: .|:|:..:..::..||......:|..
  Fly    84 AVIDLTYSHWEEGYNLV-------RSLGIGYVRLERIMRPFLDMFGDFMRQKRANNVAMVFMNAR 141

Mouse   260 DTIPARIMQQ------WRT-------SDARDH--TRVDWKRPK------YTSALTYDGV--KVM- 300
            |.:.|  |||      :||       :|...|  .|:...||.      :..|...:|:  ||. 
  Fly   142 DAVEA--MQQMLVGYPFRTLIMDASQTDPGQHFLERIRSLRPAPTYIALFARAAAMNGIFEKVQK 204

Mouse   301 AEAFQ-----------------SLRRQ-----RIDISRRGNAGDCLANPAVPWGQGIDIQRALQQ 343
            |:.||                 ..|||     |..::.|..... :..|.:..|.|..:|||:..
  Fly   205 ADLFQRPLEWHFVFLDTRDRVFKYRRQAELCTRFTLNPRAICRS-MPMPDLYCGSGFTMQRAMLL 268

Mouse   344 VRFEGLTGNVQFNEKGRRTNYTLHVIE---------MKHDGIRKIGY-------WNE-------- 384
            .....|....|.:     ..|.|.:.:         ...|.:.|..|       |:.        
  Fly   269 NVLRSLINAAQVS-----PGYPLAIYQDCNATASSSEVSDPLEKDDYNWLDMVHWSNFLAYAPPL 328

Mouse   385 ---DDKF---VPAATDA---QAG------------------------GDNSSVQNRTYIVTTILE 416
               .|:|   ||..|.|   .||                        .:..|...|.:.:.|...
  Fly   329 PHIQDQFQSPVPGLTFAVNISAGYYSSEHEAKTDLAAWSSVGEMRLLNETISPARRFFRIGTAES 393

Mouse   417 DPYVMLKKNANQFE------GNDRYEGYCVELAAEIAKHVGYSYRLEIVSDGKYGARDPDTKAWN 475
            .|:..|::.....|      |...:||||::....:::.:.:.:.:.....|..|..: :...|:
  Fly   394 IPWSYLRREEGTGELIRDRSGLPIWEGYCIDFIIRLSQKLNFEFEIVAPEVGHMGELN-ELGEWD 457

Mouse   476 GMVGELVYGRADVAVAPLTITLVREEVIDFSKPFM-SLGISIMIKKPQKSKPGVFSFLDPLAYEI 539
            |:||:||.|..|.|:|.|.:...|||||||..|:. ..||||.|:||.: :..:|.|:..|..|:
  Fly   458 GVVGDLVRGETDFAIAALKMYSEREEVIDFLPPYYEQTGISIAIRKPVR-RTSLFKFMTVLRLEV 521

Mouse   540 WMCIVFAYIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQGCD 604
            |:.||.|.:|.:::::.:.::|||.      .....|.......||.:..|.||:|.:|..||..
  Fly   522 WLSIVAALVGTAIMIWFMDKYSPYS------SRNNRQAYPYACREFTLRESFWFALTSFTPQGGG 580

Mouse   605 ISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLEAGST 669
            .:|:::|||::...:|.|.:::::::|||||||||||||.:|::|.|.||:|:.|.|..::...|
  Fly   581 EAPKAISGRMLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSLEQLARQSRINYTVVKDSDT 645

Mouse   670 KEFFRRSKIAV-----------------FEK--MWTY------------MKSAEPSVFVRTTEEG 703
            .::|...|.|.                 |:|  :|.|            :.|::|   |...:||
  Fly   646 HQYFVNMKFAEDTLYRMWKELALNASKDFKKFRIWDYPIKEQYGHILLAINSSQP---VADAKEG 707

Mouse   704 MIRV-RKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRGPVNLAVLKL 767
            ...| ......||::.:|...:| |..:.|:..:||.....:.|.:|..:||.|...::.|:|:|
  Fly   708 FANVDAHENADYAFIHDSAEIKY-EITRNCNLTEVGEVFAEQPYAVAVQQGSHLGDELSYAILEL 771

Mouse   768 SEQGVLDKLKSKWWYDKGECGSKDSGSKDKTSALSLSNVAGVFYILIGGLGLAMLVALIEFCYKS 832
            .:....::||:|:|   .:....:....:....::|.::.|||...:.||.|||:...:|..|..
  Fly   772 QKDRFFEELKAKYW---NQSNLPNCPLSEDQEGITLESLGGVFIATLFGLVLAMMTLGMEVLYYK 833

Mouse   833 RSESKRMKGFCLIPQQSINEAIRTSTLPRNSGAGASGGSGS 873
            :.:               |....|...|.|..:|:.|.|.:
  Fly   834 KKQ---------------NALEITQVRPVNDSSGSGGNSST 859

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Gria1NP_001106796.1 PBP1_iGluR_AMPA_GluR1 26..389 CDD:107385 66/334 (20%)
ANF_receptor 37..372 CDD:279440 60/296 (20%)
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 121/419 (29%)
Glutamate binding. /evidence=ECO:0000250 492..494 0/1 (0%)
Lig_chan 538..817 CDD:278489 84/310 (27%)