DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gpc4 and dally

DIOPT Version :9

Sequence 1:NP_032176.2 Gene:Gpc4 / 14735 MGIID:104902 Length:557 Species:Mus musculus
Sequence 2:NP_001246685.1 Gene:dally / 39013 FlyBaseID:FBgn0263930 Length:626 Species:Drosophila melanogaster


Alignment Length:647 Identity:144/647 - (22%)
Similarity:255/647 - (39%) Gaps:130/647 - (20%)


- Green bases have known domain annotations that are detailed below.


Mouse     1 MARLGLLALLCTLAALSAS------------------------LLAAELKSK--------SCSEV 33
            :|:|.|..|||....|||:                        .|..:.::|        .|..|
  Fly     8 LAQLLLFTLLCGFVGLSAAKHLDLDGIHHHQHHLHSATTHHRRRLQRDSRAKDAVGGSTHQCDAV 72

Mouse    34 RRLYVSKGFNKNDAPLYEINGDHLKICPQDYTCCSQEMEEKYSLQSKDDFKTVVSEQCNHLQAIF 98
            :..:.|  .:...:..|...|   .||..:  ||:...|.:...::...|:.::....:.|:.:.
  Fly    73 KSYFES--IDIKSSGTYSEKG---AICGGN--CCNNATELELRDKAAGMFEQLLHHHTSSLRGVL 130

Mouse    99 ASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFVELKRYYV------------ 151
            .:..|:|.....||.:.:|...:.:|.|.|..:...:..:...|:.|:..:.:            
  Fly   131 ETNAKQFQSHVLELAQISENMTHSLFSKVYTRMVPSSRMMIHQLYTEIMNHLIYTSNYTNSNGQL 195

Mouse   152 ----AGNV--NLEEMLNDFWARLL----ERMFRL-VNSQYHFTDEYLECVSKYTEQLKPFGDVPR 205
                .|:|  ||||.:..|:.:|.    .:|..| .|:.....::|:.|:....:::.||||:|:
  Fly   196 GRRGIGSVQSNLEEAVRHFFVQLFPVAYHQMVHLSKNNLGDLHEDYVNCLQHNFDEMHPFGDIPQ 260

Mouse   206 KLKLQVTRAFVAARTFAQGLAVARDVVSKVSVV---NPTAQCTHALLKMIYCSHCRG-----LVT 262
            :::..:.::...:..|...|..|.:|:|:...:   ..|..|...||||.||.:|.|     ...
  Fly   261 QVQSNLGKSVHMSNVFMNALLQAAEVLSEADALYGEQLTDTCKLHLLKMHYCPNCNGHHSSSRSE 325

Mouse   263 VKPCYNYCSNIMRGCLAN-QGDLDFEWNNFIDAM-LMVAERLEGPFNIESVMDPIDVKISDAIMN 325
            .|.||.||.|:||||.|. .|.||..|:..:|:: .:|...:.....|.:|:..:....|:|||.
  Fly   326 TKLCYGYCKNVMRGCSAEYAGLLDSPWSGVVDSLNNLVTTHILSDTGIINVIKHLQTYFSEAIMA 390

Mouse   326 MQDNSVQVSQKVFQGCGPPKPLPAGRISRSISESAFSARFRPYHPEQRPTTAAGTSLDRLVTDVK 390
            ...|..::.:||.:.||.|...|         .|:.....||  |..:......|..|..:....
  Fly   391 AMHNGPELEKKVKKTCGTPSLTP---------YSSGEPDARP--PPHKNNVKWATDPDPGMVLFL 444

Mouse   391 EKLKQAKKFWSSLPSTVCNDERMAAGNENEDD--CWNGKGKSRYLFAVTGNGLANQGNNPEV--- 450
            ..:.::|:|::::....|::::     .:.||  ||:|.....|...:...|..:|..||||   
  Fly   445 STIDKSKEFYTTIVDNFCDEQQ-----HSRDDHSCWSGDRFGDYTQLLINPGTDSQRYNPEVPFN 504

Mouse   451 -QVDTSKPDILI-----LRQ----------IMALRVMTSKMKNAYNGNDVDFFDISDE-----SS 494
             :..|.|.:.|:     :|:          |.|...:.:.|.....|.:....|..:|     .|
  Fly   505 AKAQTGKLNELVDKLFKIRKSIGAAAPSNSIQATHDIQNDMGEGSGGGEGQIGDDEEEYGGAHGS 569

Mouse   495 GEGSGSGCEYQQCPSEFEYNATDHSGKSANEKADSAGGAHAEAKP-------YLLAALCILF 549
            |:|||.|   ...|.|      :..|.:.||......|..:.:.|       .||..:.:||
  Fly   570 GDGSGDG---PHTPIE------ESEGTTTNEVESRDSGKTSGSNPLEGTATWMLLTLVTMLF 622

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gpc4NP_032176.2 Glypican 26..552 CDD:279494 134/598 (22%)
dallyNP_001246685.1 Glypican 51..622 CDD:279494 133/602 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3821
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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