DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gpaa1 and GAA1

DIOPT Version :9

Sequence 1:NP_034461.1 Gene:Gpaa1 / 14731 MGIID:1202392 Length:621 Species:Mus musculus
Sequence 2:NP_572273.2 Gene:GAA1 / 31517 FlyBaseID:FBgn0029818 Length:674 Species:Drosophila melanogaster


Alignment Length:671 Identity:224/671 - (33%)
Similarity:323/671 - (48%) Gaps:82/671 - (12%)


- Green bases have known domain annotations that are detailed below.


Mouse     1 MGLLSDP-VRRRA-----LARIVLRLNTPLCVLSYVAGIAWFLALAFPPLTQRTYMSENAMGSTM 59
            ||||||| :..::     |||.|.:    :|...||||:|||..||.|.....||:||||:...:
  Fly     1 MGLLSDPSISTQSKLVDGLARHVRK----VCYALYVAGVAWFFCLALPEFNHGTYLSENALSPGL 61

Mouse    60 VEEQF-VGGDR-ARSFARDFAAHRKKP-GALPVAWLERSMRSVGLEVYTQSFSRKLPF--PDETH 119
            |..:. :..:| |.....:....||.. ...|.||:...|...|||.:|.:::.:.||  ..|.|
  Fly    62 VYPEIRIDANRLAIQLLEELQRERKDHLSTTPHAWIAAKMNEFGLETHTHNYTLRYPFGGGKEYH 126

Mouse   120 ERYMVSGTNVYGILRAPRSASTESLVLTVP----CGPDATNSQAVGLLLALAAHFRGQIYWAKDI 180
                  |.|:||||||||.||||.:|...|    .......|.:|.||||.|...|.:.|||||:
  Fly   127 ------GKNIYGILRAPRIASTEGIVFAAPYRAASSVHTDISASVPLLLAFADFARRKNYWAKDL 185

Mouse   181 IFLVTDHDLLGTEAWLEAYH------DINVTGIQSSPLQGRAGAIQAAVALELSSDVVTSLDVTV 239
            |||:|:.:.||.:|||||||      |::...::...|..|||::|||:.:|:....:..:||.:
  Fly   186 IFLITEQEQLGMQAWLEAYHDGDRELDLSKAYLRPGNLPARAGSLQAALNIEVQDLEIDHVDVRI 250

Mouse   240 EGLNGQLPNLDLLNLFQTFCQKGGLLCTLQGKLQPQDWTSLEGPLQGLQTLLLMVLRQASGRPHG 304
            |||||:|||||:.||.|....:.|:....:...:.:...|.....|..:.:|.|:..|:||.|.|
  Fly   251 EGLNGKLPNLDMFNLVQRIMAREGIASGYKQAPRKKRRHSQSHFEQNFRQMLTMLASQSSGVPTG 315

Mouse   305 PHGLFLRYGVEALTL----RGINSFRQYKYDLATVG--KALEGMFRKLNHLLERLHQSFFFYLLP 363
            .||||.||.::|||:    |..::..:.....|.|.  ||:||:.|.||:||||.|||||||::.
  Fly   316 NHGLFHRYRIDALTIAANRRATHATLKGSPGSAAVPLLKAIEGIARSLNNLLERFHQSFFFYVIV 380

Mouse   364 ALSRFVSIGLYMPATGFLLLVLGLKALELWMQLHQAGVNPEEAG-------------KAPSPGTP 415
            :..|::|||.||||...|:....|||...|..|.......|:|.             :...|...
  Fly   381 SNDRYISIGDYMPALVALVACAFLKAYLTWSTLPATNAELEKAAGWLREHEQEAELEENLEPDKF 445

Mouse   416 LLPTQGVGLASLTAPLLIS---QAMGLALYFLPVLGQHLATQHFPVAEAEAVVLTLLAIYVAGLA 477
            .|| .|..|..|||.|||.   ..:.|..|||.:          |:..|......|..:.:.|..
  Fly   446 ELP-YGSVLIYLTATLLIGFLCNVLPLQQYFLEI----------PMGAAPLTTSVLSFLSLIGFV 499

Mouse   478 LPHNTHRVVNSQVPDRGWMALKLVALIYLALQLGCIALLNFSLGFLLAATMVP--AAALAKPHGP 540
            ||.    ||  .:|..|...|.:..|:.....|..|.||||:||...|...||  .|...|....
  Fly   500 LPF----VV--VLPPGGLELLHVAFLLIYGCALIVIGLLNFALGLFAAVLTVPLVIALETKEENS 558

Mouse   541 R-----TLYAALLVVTSPAVTLFGSL--FLWRELLEVPLS--LAEGWQLFLTALAQGVLEHYTYG 596
            |     |:..|.||: :|.:.::..:  ..:.:..|:|:.  :.......:.|.|.|:::...||
  Fly   559 RSTLRNTIRLATLVM-NPMMVVYVIVLAMTFYQFPELPVQKIMLRAATAAMDASAYGLIDSVIYG 622

Mouse   597 ALLFPILALGLYPCWLLFWNV 617
            ..|:.::.....|.|::.|.:
  Fly   623 NWLYFVICTIFLPLWIICWTL 643

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gpaa1NP_034461.1 Gaa1 126..613 CDD:282032 178/529 (34%)
GAA1NP_572273.2 Gaa1 127..639 CDD:282032 178/529 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167836274
Domainoid 1 1.000 222 1.000 Domainoid score I2580
eggNOG 1 0.900 - - E1_KOG3566
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37852
Inparanoid 1 1.050 274 1.000 Inparanoid score I2960
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46078
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005054
OrthoInspector 1 1.000 - - oto94215
orthoMCL 1 0.900 - - OOG6_104164
Panther 1 1.100 - - LDO PTHR13304
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R467
SonicParanoid 1 1.000 - - X3579
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.790

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