DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gdf10 and scw

DIOPT Version :9

Sequence 1:NP_665684.2 Gene:Gdf10 / 14560 MGIID:95684 Length:476 Species:Mus musculus
Sequence 2:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster


Alignment Length:470 Identity:91/470 - (19%)
Similarity:155/470 - (32%) Gaps:161/470 - (34%)


- Green bases have known domain annotations that are detailed below.


Mouse    48 GDRDSQQSPGDAAAALGPGAQDMVAIHMLRLYEKYNRRGAPP----------------------- 89
            |||..:|:.        |...:..:..:|.:|.:.:....|.                       
  Fly    49 GDRPRRQAE--------PNLHNSASKFLLEVYNEISEDQEPKEVLHQRHKRSLDDDILISNEDRQ 105

Mouse    90 --GGGNTVRSFRARL--EMIDQK-PVYF-FNLTSMQDSEMILTAAFHFYSEPPRWPRAREVFCKP 148
              ...|::.:|.:||  |.:|.: .::. ||...:.....::.|....|.:|....|....... 
  Fly   106 EIASCNSILTFSSRLKPEQLDNELDMHITFNTNDVPVDLSLVQAMLRIYKQPSLVDRRANFTVS- 169

Mouse   149 RAKNASCRLLTPGLPARLHLIFRSLSQNTATQGLLRGAMALTPPPRGLWQAKDISSII------K 207
                                ::|.|.........:.|::..|...|| |...:::..:      |
  Fly   170 --------------------VYRKLDNRQDFSYRILGSVNTTSSQRG-WLEFNLTDTLRYWLHNK 213

Mouse   208 AARRDGELLLS---AQLDT---GEKDPGVPRPSSHMPYILVYANDLAISEPNSVAVSLQRYDPFP 266
            ..:|..||.:|   :||.|   |...|...|.|.. |:|:.|.|.      ..:.|.:|:.    
  Fly   214 GLQRRNELRISIGDSQLSTFAAGLVTPQASRTSLE-PFIVGYFNG------PELLVKIQKL---- 267

Mouse   267 AGDFEPGAAPNSSADPRVRRAAQVSKPLQDNELPGLDERPAPALHAQNFHKHEFWSSPFRALKPR 331
                      ....|...|||...|.|            |.|             ..|....:| 
  Fly   268 ----------RFKRDLEKRRAGGGSPP------------PPP-------------PPPVDLYRP- 296

Mouse   332 TGRKDRKKKDQDTFTAASSQVLDFDEKTMQKARRRQWDEPRVCSRRYLKVDFADIGWNEWIISPK 396
                                                   |:.|.|....|||.::..:.|:|:||
  Fly   297 ---------------------------------------PQSCERLNFTVDFKELHMHNWVIAPK 322

Mouse   397 SFDAYYCAGACEFPMPKIVRPSNHATIQSIVRAVGIVPGIPEPCCVPDKMNSLGVL-FLDENRNA 460
            .|:||:|.|.|.||:...:..:|||.:|:::...  .|.:|:|||||..:.::.:| :|:|:...
  Fly   323 KFEAYFCGGGCNFPLGTKMNATNHAIVQTLMHLK--QPHLPKPCCVPTVLGAITILRYLNEDIID 385

Mouse   461 VLKVYPNMSVETCAC 475
            :.| |.....:.|.|
  Fly   386 LTK-YQKAVAKECGC 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gdf10NP_665684.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 39..63 4/14 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 268..301 6/32 (19%)
TGF_beta 372..475 CDD:278448 34/103 (33%)
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 41/235 (17%)
TGFB 300..400 CDD:214556 35/103 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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