DRSC/TRiP Functional Genomics Resources

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Protein Alignment RDH12 and CG30491

DIOPT Version :10

Sequence 1:NP_689656.2 Gene:RDH12 / 145226 HGNCID:19977 Length:316 Species:Homo sapiens
Sequence 2:NP_610306.1 Gene:CG30491 / 35704 FlyBaseID:FBgn0050491 Length:331 Species:Drosophila melanogaster


Alignment Length:310 Identity:164/310 - (52%)
Similarity:205/310 - (66%) Gaps:17/310 - (5%)


- Green bases have known domain annotations that are detailed below.


Human     4 TLGLLTSFFSFLYMVAPSIRKFFAGGVCRTNVQLPGKVVVITGANTGIGKETARELASRGARVYI 68
            |.||  :||         ::....||.........|||.::|||||||||||.||:|.||..||:
  Fly    21 TTGL--AFF---------VKDLMQGGQFTKETNETGKVFIVTGANTGIGKETVREIAKRGGTVYM 74

Human    69 ACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPY 133
            |||::.|.|.|..||.::|||..|..|:.||:..:|||.|...|..|::.||:||||||||.||.
  Fly    75 ACRNLKKCEEAREEIVLETKNKYVYCRQCDLASQESIRHFVAAFKREQEHLHVLINNAGVMRCPR 139

Human   134 SKTADGFETHLGVNHLGHFLLTYLLLERLKVSAPARVVNVSSVAHHIGKIPFHDLQSEKRYSRGF 198
            |.|:||.|..|||||:||||||.|||:.||.|:|:|:|||||:||..|:|...||.|:|.|..|.
  Fly   140 SLTSDGIELQLGVNHMGHFLLTNLLLDLLKKSSPSRIVNVSSLAHTRGEINTGDLNSDKSYDEGK 204

Human   199 AYCHSKLANVLFTRELAKRLQGTGVTTYAVHPGVVRSELVRHSSLL------CLLWRLFSPFVKT 257
            ||..||||||||||||||||:||.||..|:|||||.:|::||....      ..:..||.|||||
  Fly   205 AYSQSKLANVLFTRELAKRLEGTNVTANALHPGVVDTEIIRHMGFFNNFFAGLFVKPLFWPFVKT 269

Human   258 AREGAQTSLHCALAEGLEPLSGKYFSDCKRTWVSPRARNNKTAERLWNVS 307
            .|.||||||:.||...||.::|:||||||...::|.|.:.:||:.||.||
  Fly   270 PRNGAQTSLYVALDPELEKVTGQYFSDCKLKEMAPAATDTQTAKWLWAVS 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RDH12NP_689656.2 retinol-DH_like_SDR_c 39..307 CDD:212495 155/273 (57%)
CG30491NP_610306.1 Rossmann-fold NAD(P)(+)-binding proteins 45..319 CDD:473865 155/273 (57%)

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