DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gata5 and grn

DIOPT Version :9

Sequence 1:NP_032119.2 Gene:Gata5 / 14464 MGIID:109497 Length:404 Species:Mus musculus
Sequence 2:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster


Alignment Length:442 Identity:146/442 - (33%)
Similarity:175/442 - (39%) Gaps:184/442 - (41%)


- Green bases have known domain annotations that are detailed below.


Mouse    12 GQGTY-ADSGAFLHSSGTGSPVFVAPTRMPSMLPYLPSCEPGS---------------------- 53
            |...| |...||:|...|||   .:.|.....|...||.:.||                      
  Fly   198 GPSEYQAVMNAFMHQQATGS---TSLTDASCALDIKPSIQNGSASGSSGSGTTHTSTPKQREGTA 259

Mouse    54 ---------------------------------------QAPALAAHSSWTQAVAADSSAFGSGS 79
                                                   .|.:.||.:|.:.||||.::...:|.
  Fly   260 STTNSSSNSSSSQQQQQQQQQQQQQQQQSSSNTTASSNTSASSSAAAASLSAAVAASAATSSNGL 324

Mouse    80 PHPPAAHPPGATTFPFAHSPPGSGSGGSAGVRDGGAFQGALLAREQYPTPLGRPMGASYPTTYPA 144
            ....|.          |:|..|||.||..|...||           |.|       :||.:.:.|
  Fly   325 FDGTAQ----------AYSSGGSGGGGGGGSGSGG-----------YDT-------SSYASYHHA 361

Mouse   145 --------------YMSSDVAPSWT----------------------SGAFDSSILHGLQARPGG 173
                          :.||.||.:..                      ||:  ||.||||....||
  Fly   362 AAHHQAAAVAAANMFQSSSVAAAAVRHSMAAAQAHHHHHHHHSGHHHSGS--SSGLHGLGGSVGG 424

Mouse   174 LPGR-------------------------------------RTSFVPDFLEEFPGEGRECVNCGA 201
            ..|.                                     |||          .||||||||||
  Fly   425 TAGMGSMSGNSGGAGSLSGHSGAGSNAGSNCLDVKPVRTKPRTS----------AEGRECVNCGA 479

Mouse   202 LSTPLWRRDGTGHYLCNACGLYHKMNGVNRPLVRPQKRL------SSSRRSGLCCSNCHTATTTL 260
            .|||||||||||||||||||||:||||.||||::|::||      |:::|:|..|:||.|.||||
  Fly   480 TSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTSCANCKTTTTTL 544

Mouse   261 WRRNSEGEPVCNACGLYMKLHGVPRPLAMKKESIQTRKRKPKNPAKIKGSSG 312
            ||||:.|||||||||||.|||.|.|||.||||.||||.||..:.:|.|...|
  Fly   545 WRRNASGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLG 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gata5NP_032119.2 GATA-N 1..181 CDD:368398 57/303 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 71..112 10/40 (25%)
ZnF_GATA 195..239 CDD:238123 37/43 (86%)
ZnF_GATA 250..300 CDD:238123 38/49 (78%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 293..332 9/20 (45%)
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 40/46 (87%)
ZnF_GATA 473..517 CDD:238123 37/43 (86%)
ZnF_GATA 529..578 CDD:214648 36/48 (75%)
ZnF_GATA 533..583 CDD:238123 38/49 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.840

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