DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG43968 and lat-1

DIOPT Version :9

Sequence 1:NP_001262238.1 Gene:CG43968 / 14462915 FlyBaseID:FBgn0264699 Length:1026 Species:Drosophila melanogaster
Sequence 2:NP_001366731.1 Gene:lat-1 / 174419 WormBaseID:WBGene00002251 Length:1014 Species:Caenorhabditis elegans


Alignment Length:540 Identity:104/540 - (19%)
Similarity:202/540 - (37%) Gaps:106/540 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   502 IKNMCVVFWIHITATLKSTASTYHKEIAFVDNTPRIPKDFVAFMKVKITLSNFFLNFIKNSTYLL 566
            :|..||| ....|.|..:|::|.......||......||         .|::..:..:|.     
 Worm   129 VKYNCVV-PATTTTTTTTTSTTTTDSSLIVDEEEEAQKD---------ALNSDVIKPVKK----- 178

  Fly   567 RSTDYCFSELSFSNDGMHLWWTTTRIGEIAMTKKLCIQKDGMPYTRLCLGDFVHGAYWKKLTQPV 631
            :...:|.:.   :..|::  |..|:.|..:...  |.:.........|..:   |.:..:.....
 Worm   179 KEDVFCSAT---NRRGVN--WQNTKSGTTSSAP--CPEGSSGKQLWACTEE---GQWLTEFPNSA 233

  Fly   632 VCESP--KNNTKVLHDLQVAKMFKSPPEKVLKYLKDIIANSKNSIVPADI-FLIYKIFQSVHEIH 693
            .|||.  .:...||..:..::.....||    :|:::.:.::..:|..|: .:::.:.::|:.|.
 Worm   234 GCESNWISSRNSVLSGVISSEDVSGLPE----FLRNLGSETRRPMVGGDLPKVLHLLEKTVNVIA 294

  Fly   694 SSNSEFQQTTKDLTNWKNAIYEIFDIYNVLIGLDSKVIKMSAELNATNMFLKSFEMLFDTLSLNN 758
            ..:..:|..  .|:| |.|:    ::.|.:  |.::.|..|.::.....|...|.:..:...:.:
 Worm   295 EESWAYQHL--PLSN-KGAV----EVMNYM--LRNQEIWGSWDVTKRKEFASRFILAAEKAMVAS 350

  Fly   759 LSFTQIDNGEEHLNDFNSETIDYD-DIGVSVYVSKYILYFSIIPSIANVSGIALFANNNKKNTPT 822
            .. ..:.:.|.::....:.|::.. .|.:|...:.|||:    ||.|..:|    .|.:..|.|.
 Worm   351 AK-GMMTSAESNVIVQPAITVEISHKIKMSSQPTDYILF----PSAALWNG----QNVDNVNIPR 406

  Fly   823 KLKGAFKNEHYRFLQVNHNINDVVNEPDLELAAYLPIELIDTLQASTNKTNDVIVVIKVYSNDEL 887
            .          ..|::|.:...|.            ....|.|.|....::   |.:.:...|  
 Worm   407 D----------AILKINKDETQVF------------FSSFDNLGAQMTPSD---VTVAIAGTD-- 444

  Fly   888 FQQSVRNLTLLSRVVSISL--PGYSSFL-----PVPVPLIFRKSKNKKVNPPGSCLVWNYE--GW 943
             |..||...::||:|..||  .|....:     ||.:....::|..:.::.| :|:.||:.  .|
 Worm   445 -QTEVRKRRVVSRIVGASLIENGKERRVENLTQPVRITFYHKESSVRHLSNP-TCVWWNHHELKW 507

  Fly   944 IDGYSMLSYFENNEGIALCRLRRLAPTGYFLEKKISIENHIINHDLRMSNTKLNGNIIYV---IL 1005
            ......|||  :|:.:..|....|......::        :..|||...:..|...:.||   |.
 Worm   508 KPSGCKLSY--HNKTMTSCDCTHLTHFAVLMD--------VRGHDLNEIDQTLLTLLTYVGCIIS 562

  Fly  1006 LSCCILMFIGFLFCKCIFRR 1025
            :.|.:|.|..:|    ||.|
 Worm   563 IICLLLTFFAYL----IFSR 578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43968NP_001262238.1 None
lat-1NP_001366731.1 Gal_Lectin 51..133 CDD:396628 1/3 (33%)
HormR 180..244 CDD:214468 11/73 (15%)
GAIN 258..462 CDD:406802 46/253 (18%)
GPS 493..541 CDD:197639 11/58 (19%)
7tmB2_latrophilin-like_invertebrate 548..808 CDD:320556 11/35 (31%)
TM helix 1 551..575 CDD:320556 7/27 (26%)
TM helix 2 584..605 CDD:320556
TM helix 3 615..637 CDD:320556
TM helix 4 655..671 CDD:320556
TM helix 5 690..713 CDD:320556
TM helix 6 744..766 CDD:320556
TM helix 7 771..796 CDD:320556
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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