DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG43776 and vap-1

DIOPT Version :10

Sequence 1:NP_001261162.1 Gene:CG43776 / 14462630 FlyBaseID:FBgn0264298 Length:270 Species:Drosophila melanogaster
Sequence 2:NP_001024553.1 Gene:vap-1 / 181768 WormBaseID:WBGene00006886 Length:424 Species:Caenorhabditis elegans


Alignment Length:203 Identity:47/203 - (23%)
Similarity:86/203 - (42%) Gaps:31/203 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 KLRTEILRIINNFRNQFASGAFRTSENRTFTQAKRMRQILWDSELAYMARSHASTVSFQHTKCRS 126
            ||||.:.:.:.  .:..|:|||.       ..||:|.::.:...:...||:.|....:||:   :
 Worm   245 KLRTSLAKGLE--ADGIAAGAFA-------PMAKQMPKLKYSCTVEANARTWAKGCLYQHS---T 297

  Fly   127 TVRFPRVGECLAMM----VPKYKHTVHEALKKMFKIMFDEHLHIQDPRGLLQGFHPIRDYVSSHF 187
            :.:.|.:||.|.|:    :||.: |..::.|..:..:.|  ..:.....|.|.   :.|....|:
 Worm   298 SAQRPGLGENLYMISINNMPKIQ-TAEDSSKAWWSELKD--FGVGSDNILTQA---VFDRGVGHY 356

  Fly   188 TIIVSDRVSRVGCGVAVGTNCRQGSSSNFCHFLTCYFDYDNVNGSYVYKAGKPASSCSDWGTTKS 252
            |.:..:..:.:||.|   .||     ..|.:.:..|....|.....:|..|.|.::.:|...|::
 Worm   357 TQMAWEGTTEIGCFV---ENC-----PTFTYSVCQYGPAGNYMNQLIYTKGSPCTADADCPGTQT 413

  Fly   253 KEFAN-LC 259
            ...|. ||
 Worm   414 CSVAEALC 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43776NP_001261162.1 CAP_euk 64..225 CDD:349399 36/164 (22%)
vap-1NP_001024553.1 SCP 31..175 CDD:214553
SCP 234..386 CDD:214553 38/166 (23%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.