DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG43776 and vap-2

DIOPT Version :9

Sequence 1:NP_001261162.1 Gene:CG43776 / 14462630 FlyBaseID:FBgn0264298 Length:270 Species:Drosophila melanogaster
Sequence 2:NP_001300377.1 Gene:vap-2 / 181273 WormBaseID:WBGene00011462 Length:507 Species:Caenorhabditis elegans


Alignment Length:238 Identity:61/238 - (25%)
Similarity:99/238 - (41%) Gaps:44/238 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 LDKIPSL----GGTRY--HAIVPDIPKLRTEILRIINNFRNQFASG-AFRTSENRTFTQAKRMRQ 99
            |.:.||:    ||:..  :::|.|:  .|...|...|.:|::.|.| .:....|.:..:|.:|.:
 Worm   290 LCQAPSMVKDDGGSFQCDNSLVSDV--TRNFTLEQHNFYRSRLAKGFEWNGETNTSQPKASQMIK 352

  Fly   100 ILWDSELAYMARSHASTVSFQHTKCRSTVRFPRVGECLAMMV---PKYKHTVHEALKKM------ 155
            :.:|..|...|::.|:...|.|:   :....|..|:.|.|..   |..:..:|.|::|.      
 Worm   353 MEYDCMLERFAQNWANNCVFAHS---AHYERPNQGQNLYMSSFSNPDPRSLIHTAVEKWWQELEE 414

  Fly   156 FKIMFDEHL--HIQDPRGLLQGFHPIRDYVSSHFTIIVSDRVSRVGCGVAVGTNCRQGSSSNFCH 218
            |....|..|  .:.|.:|...|          |:|.:..||..|:|||:|   ||.: .|...||
 Worm   415 FGTPIDNVLTPELWDLKGKAIG----------HYTQMAWDRTYRLGCGIA---NCPK-MSYVVCH 465

  Fly   219 FLTCYFDYDNVNGSYVYKAGKPASSCSDW--GTTKSKEFANLC 259
                |....|...:.:|:.|.|.....|.  ||...|. .:||
 Worm   466 ----YGPAGNRKNNKIYEIGDPCEVDDDCPIGTDCEKT-TSLC 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43776NP_001261162.1 SCP_euk 64..225 CDD:240180 44/172 (26%)
vap-2NP_001300377.1 SCP 104..253 CDD:214553
SCP 315..468 CDD:214553 44/173 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2340
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1528782at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10334
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X35
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

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