DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Rgk1 and RABA1f

DIOPT Version :9

Sequence 1:	NP_725875.3	Gene:	Rgk1 / 14462605	FlyBaseID:	FBgn0264753	Length:	1379	Species:	Drosophila melanogaster
Sequence 2:	NP_200894.1	Gene:	RABA1f / 836207	AraportID:	AT5G60860	Length:	217	Species:	Arabidopsis thaliana

Alignment Length:	185	Identity:	47/185 - (25%)
Similarity:	79/185 - (42%)	Gaps:	46/185 - (24%)

- Green bases have known domain annotations that are detailed below.

  Fly  1121 YRVLMLGGPAVGKSSLVSQFMTSEY----------------LHAYD----TSIDDESGEKAVSVL 1165
            ::|:::|...||||:|:|:|..:|:                :|..|    ..|.|.:|::....:
plant    14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDTAGQERYRAI 78

  Fly  1166 LSGEESELIFIDHGYTEMTPDECLTNYDPHGYCVIYSAADRSSFSVAEQVLQVL--WTNQNIAQK 1228
            .|......:                     |..::|......:|...|:.|:.|  .|:.||
plant    79 TSAYYRGAV---------------------GALLVYDVTRHVTFENVERWLKELRDHTDANI--- 119

  Fly  1229 AVILVSNKADLARSRLVTSEEGKAMATAYDCKFIETSVGINHNVDELLVGLLSQI 1283
            .::.|.|||||...|.|::|:.||.|...:..|:|||...:.||:.....:||||
plant   120 VIMFVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQI 174

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Rgk1	NP_725875.3	DUF2967	459..715	CDD:288079
		P-loop_NTPase	1121..1379	CDD:304359	47/185 (25%)
		small_GTPase	1121..1286	CDD:197466	47/185 (25%)
RABA1f	NP_200894.1	Rab11_like	11..175	CDD:206660	47/185 (25%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	0	0.000