DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rgk1 and rem2

DIOPT Version :10

Sequence 1:NP_725875.3 Gene:Rgk1 / 14462605 FlyBaseID:FBgn0264753 Length:1379 Species:Drosophila melanogaster
Sequence 2:XP_002941555.1 Gene:rem2 / 100488324 XenbaseID:XB-GENE-491229 Length:292 Species:Xenopus tropicalis


Alignment Length:287 Identity:87/287 - (30%)
Similarity:133/287 - (46%) Gaps:53/287 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly  1100 SARTSLASSRESSTSNPGNGPYRVLMLGGPAVGKSSLVSQFMTSEYLHAYDTSIDDESGEKAVSV 1164
            |..:..:.|..||.|:|..|.|:|::||...||||:|...|...|....:.:...:::.|:  ::
 Frog    52 SVHSGSSDSIRSSESSPDTGVYKVMLLGDSGVGKSTLAGIFGGVEDTFPHGSEHPEDTYER--NL 114

  Fly  1165 LLSGEESELIFID----HGYTEMTPDECLTNYDPHGYCVIYSAADRSSFSVAEQVLQVLWTNQNI 1225
            |:.||::.||..|    .|......|.||...|  .:.:|:|..|||:|.....:|..|.|.:..
 Frog   115 LVDGEKTTLIVYDIWEEAGSQSWMQDSCLQMGD--AFLLIFSVTDRSTFQRLPSLLLQLRTARPH 177

  Fly  1226 AQKAVILVSNKADLARSRLVTSEEGKAMATAYDCKFIETSVGINHNVDELLVGLLSQIRLKLENP 1290
            ....:|||.||.||.|||.|..|||:::|...:||:.|.|..::||..|||.|::.||||:.:..
 Frog   178 RHIPIILVGNKGDLVRSREVNMEEGRSLAGMLNCKYTEISAALHHNTHELLEGVVRQIRLRKDEG 242

  Fly  1291 EKSRDLFRKRSIRKSKRRACSPLNAGCLNANTPLGPLGEAVATPPGSAQSSPRKYRGSRTSTSLK 1355
            |.|                          ..||       :...||..:|..::.|       ..
 Frog   243 EHS--------------------------LQTP-------ILLTPGRRESLTKRAR-------RL 267

  Fly  1356 VKGLLGRVWTR---DSKSKSCENLHVL 1379
            ::||:|:  .|   ..:||||.:|.||
 Frog   268 LQGLMGK--HRGFFKQRSKSCHDLSVL 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rgk1NP_725875.3 DUF2967 16..899 CDD:402654
P-loop containing Nucleoside Triphosphate Hydrolases 1121..1379 CDD:476819 78/264 (30%)
rem2XP_002941555.1 RGK 73..292 CDD:206715 78/264 (30%)
Blue background indicates that the domain is not in the aligned region.

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