DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rgk1 and rem1

DIOPT Version :10

Sequence 1:NP_725875.3 Gene:Rgk1 / 14462605 FlyBaseID:FBgn0264753 Length:1379 Species:Drosophila melanogaster
Sequence 2:XP_012810748.1 Gene:rem1 / 100124825 XenbaseID:XB-GENE-493530 Length:280 Species:Xenopus tropicalis


Alignment Length:332 Identity:98/332 - (29%)
Similarity:153/332 - (46%) Gaps:81/332 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1069 RRSRSNNSVASSNSSTEHLTTQQQLSAPASVSARTSLASSRESSTSNPGNGPY-RVLMLGGPAVG 1132
            ||..|.....:..:.....|..::|.:|:..:.....:.|.:|..|:..|..: ||::||.|.||
 Frog     9 RRRASTPLPCAHQNRQRGATPIRKLYSPSKAAGSAHCSGSLDSGVSDGRNEAHLRVVLLGDPGVG 73

  Fly  1133 KSSLVSQFMTSEYLHAYDTSIDDESGEKAV------SVLLSGEESELIFIDHGYTEMTPDECLTN 1191
            |||||:.|...:         |.|:.|:.:      ::::.|:|:.|:.:|  ..|....:.:.:
 Frog    74 KSSLVAIFRREQ---------DREAAEQQLAEVFDCTLMVDGKETTLLVMD--TDERNMKKAIES 127

  Fly  1192 YDP-----HGYCVIYSAADRSSF-SVAEQVLQVLWTNQ--NIAQKAVILVSNKADLARSRLVTSE 1248
            .|.     :.|.::||..||:|| |.:|..:|:..|.|  ||   .:|||.||.||.|||.|:.|
 Frog   128 SDSPMRLGNAYIIVYSVTDRASFESASELRIQLRRTRQAENI---PIILVGNKTDLVRSREVSVE 189

  Fly  1249 EGKAMATAYDCKFIETSVGINHNVDELLVGLLSQIRLKLENPEKSRDLFRKRSIRKSKRRACSPL 1313
            ||:|.|..:||||||||..:.|||.||..|::.||||:.|..:.:.. ||.:|.||.        
 Frog   190 EGRACAVVFDCKFIETSAVLQHNVQELFEGMVRQIRLRREGADTAEG-FRMQSQRKE-------- 245

  Fly  1314 NAGCLNANTPLGPLGEAVATPPGSAQSSPRKYRGSRTSTSLKVKGLLGRVWTRDSK------SKS 1372
                                                 |.:.:.:..|.|:.||:|:      |:|
 Frog   246 -------------------------------------SLTKRARRFLDRLVTRNSRSSLKVHSRS 273

  Fly  1373 CENLHVL 1379
            |.:|.||
 Frog   274 CHDLSVL 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rgk1NP_725875.3 DUF2967 16..899 CDD:402654
P-loop containing Nucleoside Triphosphate Hydrolases 1121..1379 CDD:476819 86/278 (31%)
rem1XP_012810748.1 RGK 62..280 CDD:206715 86/277 (31%)
Blue background indicates that the domain is not in the aligned region.

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