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Protein Alignment Rpb4 and rpb4
DIOPT Version :9
Sequence 1: | NP_001014633.2 |
Gene: | Rpb4 / 14462484 |
FlyBaseID: | FBgn0263757 |
Length: | 139 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_595415.1 |
Gene: | rpb4 / 2541011 |
PomBaseID: | SPBC337.14 |
Length: | 135 |
Species: | Schizosaccharomyces pombe |
Alignment Length: | 137 |
Identity: | 53/137 - (38%) |
Similarity: | 76/137 - (55%) |
Gaps: | 8/137 - (5%) |
- Green bases have known domain annotations that are detailed below.
Fly 6 PVDMVDEDAADLQFPKEFENAETLLISEVHMLLD----HRKRQNESADEEQEFSEVFMKTYAYTD 66
|..:.:||||.|:...||||.:.|.:||..:|:: .|.|:... |...::|..||.||.:
pombe 2 PRAIFEEDAAQLKLGPEFENEDMLTVSEAKILIETVLAQRARETNG---EIPMTDVMKKTVAYFN 63
Fly 67 SFRKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGRFEDEELRQILDDI 131
.|.:||..|...:...:| ..:.||||.|.||.||.|..|||:.|||||..:.:|:.|:.|||::
pombe 64 VFARFKTAEATYACERIL-GNRFHKFERAQLGTLCCEDAEEARTLIPSLANKIDDQNLQGILDEL 127
Fly 132 GTKRSLQ 138
.|.|..|
pombe 128 STLRKFQ 134
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
Rpb4 | NP_001014633.2 |
RPOL4c |
22..139 |
CDD:128904 |
47/121 (39%) |
rpb4 | NP_595415.1 |
RPB4 |
1..134 |
CDD:227575 |
52/135 (39%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Domainoid |
1 |
1.000 |
67 |
1.000 |
Domainoid score |
I2779 |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG5250 |
Hieranoid |
1 |
1.000 |
- |
- |
|
|
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
1 |
1.050 |
91 |
1.000 |
Inparanoid score |
I1746 |
OMA |
1 |
1.010 |
- |
- |
|
QHG55689 |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0003764 |
OrthoInspector |
1 |
1.000 |
- |
- |
|
oto100928 |
orthoMCL |
1 |
0.900 |
- |
- |
|
OOG6_102742 |
Panther |
1 |
1.100 |
- |
- |
LDO |
PTHR21297 |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
1 |
1.030 |
- |
avgDist |
Average_Evolutionary_Distance |
R1186 |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
1 |
0.960 |
- |
- |
|
|
|
12 | 11.860 |
|
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