DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gata2 and pnr

DIOPT Version :9

Sequence 1:NP_001342182.1 Gene:Gata2 / 14461 MGIID:95662 Length:480 Species:Mus musculus
Sequence 2:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster


Alignment Length:321 Identity:137/321 - (42%)
Similarity:165/321 - (51%) Gaps:51/321 - (15%)


- Green bases have known domain annotations that are detailed below.


Mouse   155 SVASLTPTAAHSGSHLFGFPPTPPKEVSPDPSTTGAASPASSSAGGSVARGEDKDGVKYQVSLSE 219
            |.||.:.:|:.|.:|:..........|:.......|.|.||:..|..|: |..:..|...|.:..
  Fly    33 SAASASTSASASATHVAAVKMYHSSAVAAYTDLAAAGSAASAGVGVGVS-GYHQQAVNAPVYVPS 96

Mouse   220 SMKME------GGSPLRPGLATMGTQPATHHPIPTYPSYVPAAAHDYGS--SLFHPGGFLGGPAS 276
            :.:..      |.:..:....|.|...| |...     |.|.||...||  |.:.|.||     .
  Fly    97 NRQYNHVAAHFGSAAAQNAWTTEGFGSA-HAQF-----YSPNAAVMMGSWRSAYDPSGF-----Q 150

Mouse   277 SFTPKQRSKARSCSEGRECVNCGATATPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRL-- 339
            ..:|.:.:......||||||||||.:|||||||||||||||||||||||||.|||||||.:||  
  Fly   151 RSSPYESAMDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLIKPSKRLVS 215

Mouse   340 -SAARRAGTCCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKMSSK 403
             :|.||.|.||.||.|.||||||||.:|:|||||||||||||.|||||.|:|:|||||.||....
  Fly   216 ATATRRMGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYYKLHGVNRPLAMRKDGIQTRKRKPKKT 280

Mouse   404 SKKSKKGA--------------ECFEE-------------LSKCMQE-KSPPFSAAALAGH 436
            ...|..||              ||.||             |||...: ||...|::.|.||
  Fly   281 GSGSAVGAGTGSGTGSTLEAIKECKEEHDLKPSLSLERHSLSKLHTDMKSGTSSSSTLMGH 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gata2NP_001342182.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 166..208 10/41 (24%)
ZnF_GATA 294..344 CDD:238123 42/52 (81%)
ZnF_GATA 349..398 CDD:238123 38/48 (79%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 457..480
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 42/47 (89%)
ZnF_GATA 168..212 CDD:238123 39/43 (91%)
ZnF_GATA 223..270 CDD:214648 35/46 (76%)
ZnF_GATA 226..276 CDD:238123 38/49 (78%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.840

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