DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CSF3R and Dscam1

DIOPT Version :9

Sequence 1:NP_724781.1 Gene:CSF3R / 1441 HGNCID:2439 Length:863 Species:Homo sapiens
Sequence 2:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster


Alignment Length:939 Identity:169/939 - (17%)
Similarity:306/939 - (32%) Gaps:324/939 - (34%)


- Green bases have known domain annotations that are detailed below.


Human    35 IVHLGDPITASCIIKQNCSHLDPEPQILWRLGA--------ELQPGGRQQRLSDGTQESIITLPH 91
            ::::||.|...|.|::.    |...::.|....        ::||..|..|:|:.|  |:|::|.
  Fly   632 LINMGDSIDLFCQIQKG----DRPIKVHWSFERSAGDYGFDQVQPQMRTNRISEKT--SMISIPS 690

Human    92 LNHTQAFLSCCLNWGNSLQILDQVELRAGYPP--AIPHNLSCLMNLTTSSLICQWEPGPETHL-- 152
            .:........|:....:......|:|....||  .:..........:.:.:.|:.:..|:..:  
  Fly   691 ASPAHTGRDTCIASNKAGTTTYSVDLTVNVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTW 755

Human   153 -----PTSFTLKSFKSRGNCQT-QGDSILDCVPKDGQSHCCIPRKHLLLYQNMGIWV-QAENALG 210
                 .|....|..|...|.:. :|...:|.:.|                .|.|.:: :|.|.:|
  Fly   756 KKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQK----------------TNEGYYLCEAINGIG 804

Human   211 TSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLCWEPWQPGLHINQKCELRHK-PQR 274
            :.:|..:.:...                   |||:                ..:|  ||:: .:|
  Fly   805 SGLSAVIMISVQ-------------------APPE----------------FTEK--LRNQTARR 832

Human   275 GEASWALVGPLPLEALQYELCGLLPA----------------TAYTLQIRCIRWPLPGHWSDWSP 323
            ||.:          .||.|..|..|.                ..||::...:.   .|..|    
  Fly   833 GEPA----------VLQCEAKGEKPIGILWNMNNMRLDPKNDNRYTIREEILS---TGVMS---- 880

Human   324 SLELRTTERAPTVRL-----------------------DTWWRQRQLDP--RTVQLFWKPVPLEE 363
            ||.::.|||:.:...                       :..:..:.||.  |:|||.|.. |.:.
  Fly   881 SLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEVPEMPYALKVLDKSGRSVQLSWAQ-PYDG 944

Human   364 DSGRIQGYVVSWRPS----GQAGAILPLCNTTELSCTFHLPSEAQEVALVAYNSAGTSRPTPVVF 424
            :| .:..|::.::.|    .:...::...:|||.......|:....:.:||.|:.|||:.:..| 
  Fly   945 NS-PLDRYIIEFKRSRASWSEIDRVIVPGHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEAV- 1007

Human   425 SESRGPALTRLHAMARDPH----------SLWVGWEPP--NPWP---QGYVIEWGLGPPSASNSN 474
                 ..:|...|.:..|.          ::.|.|:||  ..|.   .||.:.:.|     ||:|
  Fly  1008 -----TIITAEEAPSGKPQNIKVEPVNQTTMRVTWKPPPRTEWNGEILGYYVGYKL-----SNTN 1062

Human   475 KTWRME------QNGRATGFLLKENIRPFQLYEIIVTPLYQDTMGP-SQHVYAYSQEMAPSHAP- 531
            .::..|      :.|:.....| :|:|.:..|.:::....:...|| |:....::.|..||..| 
  Fly  1063 SSYVFETINFITEEGKEHNLEL-QNLRVYTQYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPS 1126

Human   532 ELHLKHIGKTWAQLEWVPEPPELGKSPLTHYTIF------WTNAQNQSFSAILNASSRGFVLHGL 590
            :.....:.....::.||..|.|.....:..|.:.      |.:...:.:.   ..:|...|||||
  Fly  1127 DTACTTLTSQTIRVGWVSPPLESANGVIKTYKVVYAPSDEWYDETKRHYK---KTASSDTVLHGL 1188

Human   591 EPASLYHIHLMAASQAGATNSTVLTLMTLTPEGSELHIILGLFGLLLLLTCLCGTAWLCCSPNRK 655
            :..:.|.:.::|.:..|....:|           .:|               |.|.         
  Fly  1189 KKYTNYTMQVLATTAGGDGVRSV-----------PIH---------------CQTE--------- 1218

Human   656 NPLWPSVPD-PAH---------SSLGSWVPTIMEELPGPRQGQWL-----------GQTSEMSRA 699
                |.||: |..         :.|.||.|        |.|...:           |..:|....
  Fly  1219 ----PDVPEAPTDVKALVMGNAAILVSWRP--------PAQPNGIITQYTVYSKAEGAETETKTQ 1271

Human   700 LTPHPCVQDAFQLPGLGTPPITKLTVLEEDEKKPVPWESHNSSETCGLPTLVQTYVLQGDPRAVS 764
            ..||  .|.:|:           .|.||:::    |:|...::.|                 .:.
  Fly  1272 KVPH--YQMSFE-----------ATELEKNK----PYEFWVTAST-----------------TIG 1302

Human   765 TQPQSQSGTSDQVLYGQLLGSPTSPGPGHYLRCDST----------QPLLAGLTPSPKSYENLW- 818
            ...||:|          ::..|:...|......|.|          .|.||...|.|   |..| 
  Fly  1303 EGQQSKS----------IVAMPSDQVPAKIASFDDTFTATFKEDAKMPCLAVGAPQP---EITWK 1354

Human   819 -----FQAS------PLGTLVTPAPSQED 836
                 |.|:      |.|:|:..:.:::|
  Fly  1355 IKGVEFSANDRMRVLPDGSLLIKSVNRQD 1383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CSF3RNP_724781.1 Lep_receptor_Ig 24..110 CDD:283889 17/82 (21%)
FN3 249..329 CDD:238020 17/96 (18%)
FN3 345..423 CDD:238020 21/83 (25%)
fn3 430..514 CDD:278470 20/104 (19%)
FN3 527..607 CDD:214495 17/86 (20%)
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653
Ig 269..340 CDD:143165
IG_like 353..425 CDD:214653
IGc2 361..413 CDD:197706
I-set 433..527 CDD:254352
IGc2 446..517 CDD:197706
I-set 533..618 CDD:254352
IGc2 544..607 CDD:197706
Ig 641..714 CDD:143165 14/78 (18%)
IGc2 735..804 CDD:197706 13/84 (15%)
I-set 819..914 CDD:254352 21/129 (16%)
Ig 833..921 CDD:299845 16/104 (15%)
FN3 918..1011 CDD:238020 22/100 (22%)
FN3 1018..1116 CDD:238020 21/103 (20%)
FN3 1124..1217 CDD:238020 19/121 (16%)
FN3 1222..1312 CDD:238020 23/141 (16%)
Ig 1339..1406 CDD:299845 13/48 (27%)
FN3 1409..1499 CDD:238020
FN3 1504..1584 CDD:238020
Dscam_C 1890..2008 CDD:289151
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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