DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gabrd and GluClalpha

DIOPT Version :9

Sequence 1:XP_006538609.2 Gene:Gabrd / 14403 MGIID:95622 Length:483 Species:Mus musculus
Sequence 2:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GabrdXP_006538609.2 LGIC_ECD 97..280 CDD:355788
Cys-loop 198..212 CDD:349787
LGIC_TM_GABAAR_delta 283..>371 CDD:349857
TM1 helix 286..306 CDD:349857
TM2 helix 315..336 CDD:349857
TM3 helix 346..368 CDD:349857
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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