DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gabrb3 and SecCl

DIOPT Version :9

Sequence 1:NP_001033790.1 Gene:Gabrb3 / 14402 MGIID:95621 Length:473 Species:Mus musculus
Sequence 2:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster


Alignment Length:528 Identity:137/528 - (25%)
Similarity:239/528 - (45%) Gaps:98/528 - (18%)


- Green bases have known domain annotations that are detailed below.


Mouse     8 LLLPIWLSWTLGTRGSEPSSVNDPGNMSFVKETVDKL--LKGYDIRLRP---DFGGP--PVCVGM 65
            |:|.||.|..:.....|..|:.|.|::. ..:.:.:|  :..||...||   |..|.  |:.|..
  Fly    16 LVLSIWTSVGVKAEEEECPSMADAGSLQ-QTQLIQRLTHVCRYDRLERPFEYDSDGKRLPIVVKT 79

Mouse    66 NIDIASIDMVSEVNMDYTLTMYFQQYWRDKRLAYSGIPL--NLTLDNRVADQLWVPDTYFLNDKK 128
            .|.:..:..::...:.:.:....|..::||||||.....  |:.....::::||:|..:|.|:::
  Fly    80 RIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAYKAFNRSDNILGQKHLSERLWLPHIFFANERE 144

Mouse   129 SFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYW 193
            |.:.|...|:.:..|.|:|.|:...|:..:..|.|:.:::|.|:|.|:..:||:.|.|.|:...|
  Fly   145 SSILGTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTVLESWMYNTSDLILEW 209

Mouse   194 R-----GGDKAVTGVERIELPQFSIVEHRLVS---------------RNVVFATGAYPRLSLSFR 238
            .     ..|           |:..:.|:.:..               |:..|| |.|..||.:..
  Fly   210 EPHTPISFD-----------PEMRLTEYNMAQFWHNTTIVQSDGDNLRHGAFA-GNYSSLSFTVN 262

Mouse   239 LKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYV 303
            |||.||:::|..|:||::|..:||||||:..|||..|:.||.:|:|:..|:::...:.|||:.|:
  Fly   263 LKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLSFITLSSSQSKNLPKVSYI 327

Mouse   304 KAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQKKLAEKTAKAKNDRSKSEINRVDAHGNIL 368
            |..:::.:||..|:|.:|:|:||||.|:     :|::.:..|...:|               .|:
  Fly   328 KVSEVWFLGCTFFIFGSLVEFAFVNTIW-----RRKENIELKKVNSK---------------YII 372

Mouse   369 LAPMDVHNEMNEVAGSVGD--TRNSAISFDNSGIQYRKQSM------PKEGHGRYMG-DRSIPHK 424
            .:.:.......::.||:.:  ...|..|.||  |....:|:      ..:|...|:. ..::|..
  Fly   373 KSTLTPRPARRQIGGSLSNESRARSCSSLDN--IVSSTESVRNGNGTVNQGFNNYLTVHPNLPII 435

Mouse   425 KT------------------HLRRRSSQLKIKIPDLTDVNA------IDRWSRIVFPFTFSLFNL 465
            :|                  |:.......|...|..|.:..      |||.||.:||..|..||.
  Fly   436 RTECAEADTVSICSARTNNDHIVDVDKDKKDTPPTFTTMTPQEIAMWIDRRSRFLFPAMFLAFNA 500

Mouse   466 VYWLY-YV 472
            :||.: ||
  Fly   501 LYWTFVYV 508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gabrb3NP_001033790.1 LIC 4..471 CDD:273305 135/525 (26%)
SecClNP_001261986.1 LIC 43..505 CDD:273305 126/496 (25%)
Neur_chan_LBD 44..267 CDD:280998 56/234 (24%)
Neur_chan_memb 275..503 CDD:280999 65/249 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3673
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.760

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