DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gabrb2 and Rdl

DIOPT Version :9

Sequence 1:NP_001334243.1 Gene:Gabrb2 / 14401 MGIID:95620 Length:512 Species:Mus musculus
Sequence 2:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster


Alignment Length:590 Identity:193/590 - (32%)
Similarity:290/590 - (49%) Gaps:139/590 - (23%)


- Green bases have known domain annotations that are detailed below.


Mouse    20 AAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLT 84
            ||....|:....|:|.:   :|.....||.|:||::|||||.||:.:.:.||..:|||.||:||.
  Fly    46 AATGGGSMLGDVNISAI---LDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLD 107

Mouse    85 MYFQQAWRDKRLSYNVIP--LNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGT 147
            .||:|.|.|.||:|...|  ..|::.:.....:|||||:|:|:|:|:.|..|..|..||:|..|:
  Fly   108 FYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGS 172

Mouse   148 VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSI 212
            :...:|:|.||:|.|:|:.:|:|.|.|.:||||:|||..||.::||...::|...:::|||||.:
  Fly   173 ITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRV 237

Mouse   213 VDYKLITKKVVFSTGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVAL 277
            :.::....::..:||:|.||:...:..|::||:::|.|:||.||.|:||||||:|.:|:.|||||
  Fly   238 LGHRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVAL 302

Mouse   278 GITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIF--FGRGPQR--- 337
            |:||||||||:.:.....||||.|||:||:||..|||.||.:|||||.|.|:.  .....||   
  Fly   303 GVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMA 367

Mouse   338 ------QKK-----AAEKAANANNE---------------------------------------- 351
                  |||     |.::.||.|..                                        
  Fly   368 IQKIAEQKKQQLDGANQQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHG 432

Mouse   352 ------------KMRLDVNKMFYKDIKQN-GTQYRSLWDPTGDLSPTRRTTNYDFSLYTMDPHEN 403
                        |..:....:.:.:|:|| ||:..|:   .|.|....|     |.::  ||..:
  Fly   433 HHAHSHGHPHAPKQTVSNRPIGFSNIQQNVGTRGCSI---VGPLFQEVR-----FKVH--DPKAH 487

Mouse   404 ILLSTLE--IKNEMATSEA------------------------VMGLGDPRSTMLAYDASSIQYR 442
            ....|||  :.......::                        ..|.|||               
  Fly   488 SKGGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGGGDP--------------- 537

Mouse   443 KAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYW 507
            :|.:|.|..       |..:.| :::.....|.||..|      ||::|||.|||.|..||::||
  Fly   538 EAAVPAHLL-------HPGKVK-KVKDINKLLGITPSD------IDKYSRIVFPVCFVCFNLMYW 588

Mouse   508 LYYVN 512
            :.|::
  Fly   589 IIYLH 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gabrb2NP_001334243.1 LIC 9..510 CDD:273305 192/586 (33%)
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 71/182 (39%)
Neur_chan_memb 274..588 CDD:397193 100/352 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D226476at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101786
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.720

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