Protein Alignment Gabra1 and GluClalpha

DIOPT Version :9

• Sequence 1: XP_006532258.1
• Gene: Gabra1 / 14394
• MGIID: 95613
• Length: 553
• Species: Mus musculus
• Sequence 2: NP_001287408.1
• Gene: GluClalpha / 42350
• FlyBaseID: FBgn0024963
• Length: 463
• Species: Drosophila melanogaster
• Alignment Length: 481
• Identity: 166/481 - (34%)
• Similarity: 250/481 - (51%)
• Gaps: 60/481 - (12%)

Mouse   104 GLSDYLWAWTLILSTLSGRSYGQPSQDELKDNTTVFTRILDRLLDG--YDNRLRPGLGERVTE-- 164
            |...|.|| .|..::|...|....::...::..   .::||::|..  ||.|:||. |...|:
  Fly     2 GSGHYFWA-ILYFASLCSASLANNAKINFREKE---KKVLDQILGAGKYDARIRPS-GINGTDGP 61

Mouse   165 --VKTDIFVTSFGPVSDHDMEYTIDVFFRQSWKDERLKF---KGPMTVLRLNNLMASKIWTPDTF 224
              |:.:|||.|...:.|..|||::.:.||:.|.||||||   :|.:..|.|..  |:::|.||.|
  Fly    62 AVVRVNIFVRSISKIDDVTMEYSVQLTFREQWTDERLKFDDIQGRLKYLTLTE--ANRVWMPDLF 124

Mouse   225 FHNGKKSVAHNMTMPNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHACPLKFGSYAYTRA 289
            |.|.|:...||:.|||..:||..:|::||::|:::...|||:|:.:|:|...|.|:..||.:|..
  Fly   125 FSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTN 189

Mouse   290 EVVYEWTR-EPARSVVVAEDGSRLNQYDLLGQTVDSGIVQSSTGEYVVMTTHFHLKRKIGYFVIQ 353
            ::|:.|.. :|.:.|    ....|.::.|.....|....:::||||..:......||:..|::||
  Fly   190 DLVFLWKEGDPVQVV----KNLHLPRFTLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQ 250

Mouse   354 TYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCY 418
            .|:||.|.||:|.|||||::.:||||...||||:|||.|.:.....|||.|:|..|:|.:..||.
  Fly   251 IYIPCCMLVIVSWVSFWLDQGAVPARVSLGVTTLLTMATQTSGINASLPPVSYTKAIDVWTGVCL 315

Mouse   419 AFVFSALIEFATVNYFTKRGYAWDGKSVVPEKPKKVKDPLIKKNNTYAPTATSYTPNLARGDPGL 483
            .|||.||:|||.|||.::.|         ..|....|:.:.||.......:.....:|...|..
  Fly   316 TFVFGALLEFALVNYASRSG---------SNKANMHKENMKKKRRDLEQASLDAASDLLDTDSN- 370

Mouse   484 ATIAKSATI---------------EP----KEVKPETKPPEPK-----KTFNS-----VSKIDRL 519
            ||.|.::..               :|    |.::.|.....||     ||:.|     ..:||.:
  Fly   371 ATFAMASQFARGGGQQKPLVRHPGDPLALEKRLQCEVHMQAPKRPNCCKTWLSKFPTRSKRIDVI 435

Mouse   520 SRIAFPLLFGIFNLVYWATYLNREPQ 545
            |||.|||:|.:||||||:|||.||.:
  Fly   436 SRITFPLVFALFNLVYWSTYLFREEE 461

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Gabra1	XP_006532258.1	LIC	105..539	CDD:273305	160/472 (34%)
		LGIC_ECD_GABAAR_A1	153..346	CDD:349835	68/200 (34%)
GluClalpha	NP_001287408.1	LIC	3..455	CDD:273305	160/472 (34%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910