DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gabpa and Ets96B

DIOPT Version :9

Sequence 1:XP_006522968.1 Gene:Gabpa / 14390 MGIID:95610 Length:456 Species:Mus musculus
Sequence 2:NP_996290.1 Gene:Ets96B / 42952 FlyBaseID:FBgn0039225 Length:640 Species:Drosophila melanogaster


Alignment Length:147 Identity:60/147 - (40%)
Similarity:86/147 - (58%) Gaps:3/147 - (2%)


- Green bases have known domain annotations that are detailed below.


Mouse   272 IPASVPPA-TPTTIKVINSSAKAAKVQRSPRISGEDRSSPGNRTDLGNNGQIQLWQFLLELLTD- 334
            |.::.|.| .|..:....||....::.:....:|...||.|.... ...|.:||||||:.||.: 
  Fly   448 ISSTYPSALRPNVVDSTTSSDAELRLDQFYASNGISTSSNGQAIS-QRRGSLQLWQFLVALLDEP 511

Mouse   335 KDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVY 399
            ..:..||:|.|...||||.:||.||::||.:||:|.|||:||||:|||||:..::.||.|:|:||
  Fly   512 TTSASCIAWTGRGMEFKLIEPEEVARRWGLQKNRPAMNYDKLSRSLRYYYEKGIMQKVNGERYVY 576

Mouse   400 KFVCDLKTLIGYSAAEL 416
            :||||...|...:...|
  Fly   577 RFVCDPDALFNMAYGHL 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GabpaXP_006522968.1 GABP-alpha 40..119 CDD:371630
SAM_PNT-GABP-alpha 168..254 CDD:176084
ETS 321..405 CDD:197710 46/84 (55%)
Ets96BNP_996290.1 ETS 497..583 CDD:197710 47/85 (55%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3806
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D243757at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.