DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gabpa and pnt

DIOPT Version :9

Sequence 1:XP_006522968.1 Gene:Gabpa / 14390 MGIID:95610 Length:456 Species:Mus musculus
Sequence 2:NP_524461.2 Gene:pnt / 42757 FlyBaseID:FBgn0003118 Length:718 Species:Drosophila melanogaster


Alignment Length:600 Identity:127/600 - (21%)
Similarity:175/600 - (29%) Gaps:324/600 - (54%)


- Green bases have known domain annotations that are detailed below.


Mouse   137 LVEEAQVI----TLDGTKHITTISD----ETSEQVTR----------------WAAALEGYRKEQ 177
            |||...:.    .:.|.|.:.::||    |.|.:|..                ..|:...:.||.
  Fly   109 LVESKNIFIKEEPIHGCKDLCSLSDISDHEASLEVPTALPPLTPGTNRKVNEVLKASFASWEKEV 173

Mouse   178 ERLGIPYDPIHWSTDQVLHWVVWVMKEFSMTDIDLTTL-NISGRELCSLNQEDFFQRVP--RGEI 239
            ::..|..||..|:.:.|::|:.|...|||:..::|... .:.||.:..|.:|.|....|  .|:|
  Fly   174 QKCNITKDPREWTEEHVIYWLNWAKNEFSLVSMNLDPFYKMKGRAMVDLGKEKFLAITPPFTGDI 238

Mouse   240 LWSHLELLRK---------------------YVLASQEQ---------------QMNEIVTIDQP 268
            ||.||::|:|                     .|..|..|               .:|..:::|..
  Fly   239 LWEHLDILQKDCEKPNEDIVHGNSFESATTASVCGSDHQVANYPNETHANSNNSSINSRLSMDYV 303

Mouse   269 VQI---------------------------IPASVPP-----ATPTTIKVINSSAKAAK------ 295
            ...                           |..|.||     ..||    :|.|..|:.      
  Fly   304 TSAGNSDNKNFHRATPHSHNGYNTSNTHDRINNSTPPQQQQSQQPT----VNGSGSASSNNNNSM 364

Mouse   296 ----VQRS--------------------------------------------------------- 299
                ||:|                                                         
  Fly   365 LPPAVQQSNNENNNTSSSNTNNSSNNNNNSGGSNNSNAGSNNNNNNNNNINFMAAAAIFQHHLKE 429

Mouse   300 -------------------------------------------------------------PRIS 303
                                                                         ..||
  Fly   430 EPGTQNGNIGGYGGGSNSQNDPTDLSSYGLPAHLAAYGGGSGSGPTGGRSSGGGGDESDYHSTIS 494

Mouse   304 GED----RSSPGNRT------DLGN---------------------------------------- 318
            .:|    :||.||.:      ..||                                        
  Fly   495 AQDHQSQQSSGGNGSGGASGGSTGNSNGYLDSSSEFYGSYAGRNRFHDGYPPEFTPYDAQSFQSM 559

Mouse   319 -----------------------------------------------NGQIQLWQFLLELLTDKD 336
                                                           :|.|||||||||||.||.
  Fly   560 GPQPTAMDQWGAAHAHQHPAAYMSTLGLDKGLLGGYTTQGGVPCFTGSGPIQLWQFLLELLLDKT 624

Mouse   337 ARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKF 401
            .:..|||.||..||||..|:.||::||.|||||.||||||||.||||||.::|.|..|||:||:|
  Fly   625 CQSFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRF 689

Mouse   402 VCDLKTLIGYSAAEL 416
            ||||:.|:|::..||
  Fly   690 VCDLQNLVGHTPEEL 704

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GabpaXP_006522968.1 GABP-alpha 40..119 CDD:371630
SAM_PNT-GABP-alpha 168..254 CDD:176084 29/109 (27%)
ETS 321..405 CDD:197710 56/83 (67%)
pntNP_524461.2 SAM_PNT-ETS-1,2 179..250 CDD:188879 24/70 (34%)
ETS 609..693 CDD:197710 56/83 (67%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3806
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D243757at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.