Protein Alignment PABPC5 and PAB1

DIOPT Version :9

• Sequence 1: NP_543022.1
• Gene: PABPC5 / 140886
• HGNCID: 13629
• Length: 382
• Species: Homo sapiens
• Sequence 2: NP_011092.1
• Gene: PAB1 / 856912
• SGDID: S000000967
• Length: 577
• Species: Saccharomyces cerevisiae
• Alignment Length: 364
• Identity: 177/364 - (48%)
• Similarity: 250/364 - (68%)
• Gaps: 3/364 - (0%)

Human    18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFD 82
            |:||||||:|.|:|..||..|.|.|.:...|:|||.:|::.|||.||||........|:..:|:.
Yeast    38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYT 102

Human    83 LINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKG 146
            .|.|:..|:||||.|..|||.|.||||||||...|||:||:..||.||:|||.|:..|:|| |||
Yeast   103 PIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKG 167

Human   147 YAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDID 211
            :.:|||:...||..||..:||:.||.:::||......:||.:::. ..:|.:||::||||..:..
Yeast   168 FGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLE-ETKAHYTNLYVKNINSETT 231

Human   212 DEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276
            ||:.:|||.::||..|..:.:||.||.||||||.||.||.|.|||..|:...::|:.||||||||
Yeast   232 DEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 296

Human   277 KIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM-MEVGQG 340
            |.||:..|::::|..||::.::..||.:::||||::::||||:|||:.:|:|:.|||| .|.|:.
Yeast   297 KNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361

Human   341 KGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
            ||||.||||:.||||||:.|.|.:||..|||:|.:.|.:
Yeast   362 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
PABPC5	NP_543022.1	PABP-1234	22..>379	CDD:130689	174/358 (49%)
PAB1	NP_011092.1	PABP-1234	38..559	CDD:130689	177/364 (49%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	94	1.000	Domainoid score	I1875
eggNOG	1	0.900	-	-		E1_KOG0123
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR24012
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	6	5.870