Protein Alignment PABPC5 and pabpc1l

DIOPT Version :9

• Sequence 1: NP_543022.1
• Gene: PABPC5 / 140886
• HGNCID: 13629
• Length: 382
• Species: Homo sapiens
• Sequence 2: NP_001005062.1
• Gene: pabpc1l / 448615
• XenbaseID: XB-GENE-5742459
• Length: 629
• Species: Xenopus tropicalis
• Alignment Length: 365
• Identity: 220/365 - (60%)
• Similarity: 289/365 - (79%)
• Gaps: 1/365 - (0%)

Human    15 YLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
            |..|:||||||.|||||.|||:||.||||:...|:|||..||..|||.|:||:.|||||.||:||
 Frog     8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72

Human    80 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS 144
            ||::|.|:|.|:||||.|..||||||||:||||||:||||:||:..|||||||||||||||::||
 Frog    73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS 137

Human   145 KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDD 209
            :||.:|||::..||||||..|||:.||:|:|:||.||...||..|...: ...||||::||.|:|
 Frog   138 RGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAK-VMEFTNVYIKNFGED 201

Human   210 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274
            :||::|:|:|..:|.|.||||:.|.:|:|:|||||.|..||.|||||.:::||.::|:::|||||
 Frog   202 MDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA 266

Human   275 QKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQ 339
            ||:|||..||:|:||:::.:..:|..||.:|:||||:.|:|::|::|||.:|:|:.||||.|.|.
 Frog   267 QKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGH 331

Human   340 GKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
            .||||.|||||.|||||||.|||||||.:|||:|.|.|.:
 Frog   332 SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
PABPC5	NP_543022.1	PABP-1234	22..>379	CDD:130689	216/356 (61%)
pabpc1l	NP_001005062.1	PABP-1234	11..612	CDD:130689	219/362 (60%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
NCBI	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1027234at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.920